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Hao Zhu2a64dc62017-08-28 10:57:57 -04001#' Convert a LaTeX table to an image and place it in a rmarkdown document
2#'
3#' @description This is a LaTeX-only function. This function will render the
4#' raw LaTeX code (could be codes generated by other table packages like
5#' `xtable`) to generate a table, convert it to an image and put it back to a
6#' rmarkdown environment. It is a "better than nothing" solution to print high
7#' quality tables in rmarkdown Word document. By using this, you need to take
Hao Zhu245931c2017-09-01 22:43:56 -04008#' the responsibility of explaining to your collaborators why they can't make
Hao Zhua9c43dc2017-09-04 23:00:39 -04009#' edits to the tables in Word.
Hao Zhu2a64dc62017-08-28 10:57:57 -040010#'
11#' Also, if a filename is provided, user has the option to "save" the table to
12#' an image file like `ggplot2::ggsave()`.
13#'
14#' The idea of this function was coming from [this StackOverflow question](https://stackoverflow.com/questions/44711313/save-rmarkdowns-report-tables-and-figures-to-file).
15#' The approach was learned and adopted from the [texpreview](https://github.com/metrumresearchgroup/texPreview)
16#' package, which allows you to preview the results of TeX code in the Viewer panel.
17#'
18#' @param kable_input Raw LaTeX code to generate a table. It doesn't have to
19#' came from `kable` or `kableExtra`.
20#' @param filename Character String. If specified, the image will be saved under
21#' the specified (path &) name. You don't need to put file format like ".png"
22#' here.
23#' @param file_format Character String to specify image format, such as `png`,
24#' `jpeg`, `gif`, `tiff`, etc. Default is `png`.
25#' @param latex_header_includes A character vector of extra LaTeX header stuff.
26#' Each element is a row. You can have things like
27#' `c("\\usepackage{threeparttable}", "\\usepackage{icons}")`
28#' @param keep_pdf A T/F option to control if the mid-way standalone pdf should
29#' be kept. Default is `FALSE`.
30#'
Hao Zhu2a64dc62017-08-28 10:57:57 -040031#' @export
32kable_as_image <- function(kable_input, filename = NULL,
33 file_format = "png",
34 latex_header_includes = NULL,
35 keep_pdf = FALSE) {
36 temp_tex <- c(
37 "\\documentclass[border=1mm, preview]{standalone}",
38 "\\usepackage[active,tightpage]{preview}",
39 "\\usepackage{varwidth}",
Hao Zhua9c43dc2017-09-04 23:00:39 -040040 "\\usepackage{amssymb, amsmath}",
Hao Zhu2a64dc62017-08-28 10:57:57 -040041 "\\usepackage{ifxetex,ifluatex}",
42 "\\usepackage{fixltx2e}",
43 "\\usepackage{polyglossia}",
44 "\\setmainlanguage{$mainlang$}",
45 "\\usepackage{booktabs}",
46 "\\usepackage{longtable}",
47 "\\usepackage{array}",
48 "\\usepackage{multirow}",
49 "\\usepackage[table]{xcolor}",
50 "\\usepackage{wrapfig}",
51 "\\usepackage{colortbl}",
52 "\\usepackage{graphicx}",
53 "\\usepackage{mathspec}",
54 "\\usepackage{xltxtra,xunicode}",
55 latex_header_includes,
56 "\\begin{document}",
57 enc2utf8(as.character(kable_input)),
58 "\\end{document}"
59 )
60 temp_tex <- paste(temp_tex, collapse = "\n")
Hao Zhucc397922017-09-14 11:49:21 -040061 temp_file <- paste0("table_", format(Sys.time(), "%Y-%m-%d_%H%M%S"))
Hao Zhu2a64dc62017-08-28 10:57:57 -040062 write_file(temp_tex, paste0(temp_file, ".tex"))
63 system(paste0("xelatex -interaction=batchmode ", temp_file, ".tex"))
64 temp_file_delete <- paste0(temp_file, c(".tex", ".aux", ".log"))
65 unlink(temp_file_delete)
66
67 table_img_pdf <- image_read(paste0(temp_file, ".pdf"), density = 300)
68 if (!keep_pdf) {
69 unlink(paste0(temp_file, ".pdf"))
70 }
71 table_img <- image_convert(table_img_pdf, file_format)
72 if (!is.null(filename)) {
73 temp_img <- paste0(filename, ".", file_format)
74 } else {
75 temp_img <- tempfile(fileext = paste0(".", file_format))
76 }
77 image_write(table_img, temp_img)
78
79 include_graphics(temp_img)
80}