Updates
diff --git a/.Rproj.user/441ADA46/rmd-outputs b/.Rproj.user/441ADA46/rmd-outputs
index 4ef23e4..cbe9550 100644
--- a/.Rproj.user/441ADA46/rmd-outputs
+++ b/.Rproj.user/441ADA46/rmd-outputs
@@ -1,8 +1,9 @@
~/Documents/GitHub/posterdown/inst/rmarkdown/templates/posterdown_pdf/skeleton/skeleton.pdf
~/Documents/GitHub/posterdown/inst/rmarkdown/templates/posterdown_pdf/skeleton/skeleton.pdf
~/Documents/GitHub/posterdown/inst/rmarkdown/templates/posterdown_pdf/skeleton/skeleton.pdf
-
~/Documents/GitHub/posterdown/inst/rmarkdown/templates/posterdown_pdf/skeleton/skeleton.pdf
+
+
diff --git a/.Rproj.user/441ADA46/sources/per/t/1F39924A b/.Rproj.user/441ADA46/sources/per/t/1F39924A
index 9c71a1c..d42f233 100644
--- a/.Rproj.user/441ADA46/sources/per/t/1F39924A
+++ b/.Rproj.user/441ADA46/sources/per/t/1F39924A
@@ -13,7 +13,7 @@
"project_path" : "inst/rmarkdown/templates/posterdown_pdf/resources/template.tex",
"properties" : {
"cursorPosition" : "84,0",
- "scrollLine" : "78"
+ "scrollLine" : "0"
},
"relative_order" : 2,
"source_on_save" : false,
diff --git a/.Rproj.user/441ADA46/sources/per/t/25D73910 b/.Rproj.user/441ADA46/sources/per/t/25D73910
index e6e416e..7813c5d 100644
--- a/.Rproj.user/441ADA46/sources/per/t/25D73910
+++ b/.Rproj.user/441ADA46/sources/per/t/25D73910
@@ -7,8 +7,8 @@
"folds" : "",
"hash" : "2009733320",
"id" : "25D73910",
- "lastKnownWriteTime" : 1546972503,
- "last_content_update" : 1546972503137,
+ "lastKnownWriteTime" : 1546983045,
+ "last_content_update" : 1546983045,
"path" : "~/Documents/GitHub/posterdown/inst/rmarkdown/templates/posterdown_pdf/skeleton/skeleton.Rmd",
"project_path" : "inst/rmarkdown/templates/posterdown_pdf/skeleton/skeleton.Rmd",
"properties" : {
diff --git a/.Rproj.user/441ADA46/sources/prop/B68389EB b/.Rproj.user/441ADA46/sources/prop/B68389EB
index d158a8f..4345014 100644
--- a/.Rproj.user/441ADA46/sources/prop/B68389EB
+++ b/.Rproj.user/441ADA46/sources/prop/B68389EB
@@ -1,4 +1,4 @@
{
"cursorPosition" : "84,0",
- "scrollLine" : "78"
+ "scrollLine" : "0"
}
\ No newline at end of file
diff --git a/.Rproj.user/shared/notebooks/paths b/.Rproj.user/shared/notebooks/paths
index 3688423..312b9c7 100644
--- a/.Rproj.user/shared/notebooks/paths
+++ b/.Rproj.user/shared/notebooks/paths
@@ -1,3 +1,4 @@
+/home/thornux/Documents/GitHub/posterdown/inst/rmarkdown/templates/posterdown_pdf/skeleton/skeleton.Rmd="55E43040"
C:/Users/Brent Thorne/Documents/GitHub/posterdown/.travis.yml="ABFEDDC7"
C:/Users/Brent Thorne/Documents/GitHub/posterdown/DESCRIPTION="87F85092"
C:/Users/Brent Thorne/Documents/GitHub/posterdown/NAMESPACE="8919F14F"
diff --git a/inst/rmarkdown/templates/posterdown_pdf/skeleton/skeleton.pdf b/inst/rmarkdown/templates/posterdown_pdf/skeleton/skeleton.pdf
deleted file mode 100644
index 35dbcdd..0000000
--- a/inst/rmarkdown/templates/posterdown_pdf/skeleton/skeleton.pdf
+++ /dev/null
Binary files differ
diff --git a/inst/rmarkdown/templates/posterdown_pdf/skeleton/skeleton.tex b/inst/rmarkdown/templates/posterdown_pdf/skeleton/skeleton.tex
deleted file mode 100644
index c0a8ce8..0000000
--- a/inst/rmarkdown/templates/posterdown_pdf/skeleton/skeleton.tex
+++ /dev/null
@@ -1,408 +0,0 @@
-%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
-%% %% Posterdown PDF class for LaTeX files 08-JAN-2019
-%% %% For any information please send an e-mail to:
-%% %% brentthonre18@gmail.com (Brent Thorne)
-%% %%
-%% %% Initial class provided by:
-%% %% Brent Thorne
-%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
-
-\documentclass[article,30pt,extrafontsizes]{memoir}
-
-%utf-8 seems to be important
-\RequirePackage[utf8]{inputenc}
-\RequirePackage[T1]{fontenc}
-\RequirePackage{multicol}
-\RequirePackage{graphicx}
-\RequirePackage{blindtext}
-\RequirePackage[svgnames,table]{xcolor}
-\RequirePackage{tikz}
-\RequirePackage[framemethod=tikz]{mdframed}
-\RequirePackage{color}
-\RequirePackage{geometry}
-\RequirePackage{adjmulticol}
-
-%For kable extra package :)
-\RequirePackage{booktabs}
-\RequirePackage{longtable}
-\RequirePackage{array}
-\RequirePackage{multirow}
-\RequirePackage{wrapfig}
-\RequirePackage{float}
-\RequirePackage{colortbl}
-\RequirePackage{pdflscape}
-\RequirePackage{pagecolor}
-\RequirePackage{tabu}
-\RequirePackage{threeparttable}
-\RequirePackage{threeparttablex}
-\RequirePackage[normalem]{ulem}
-\RequirePackage{makecell}
-
-%%%%%%%%% COLOURS %%%%%%%%
-
-%Fill/ Line Colours
-\definecolor{titlebgcol}{HTML}{0b4545}
-\definecolor{columnlinecol}{HTML}{0b4545}
-\definecolor{posterbgcol}{HTML}{ffffff}
-\definecolor{posterbgcol}{HTML}{ffffff}
-\definecolor{headerbgcol}{HTML}{008080}
-
-% Text Colours
-\definecolor{titletextcol}{HTML}{ffffff}
-\definecolor{authortextcol}{HTML}{008080}
-\definecolor{affiliationtextcol}{HTML}{FFFFFF}
-\definecolor{headertextcol}{HTML}{CC0000}
-\definecolor{bodytextcol}{HTML}{000000}
-\definecolor{footnotetextcol}{HTML}{FFFFFF}
-\definecolor{citecol}{HTML}{CC0000}
-\definecolor{urlcol}{HTML}{008080}
-\definecolor{linkcol}{HTML}{008080}
-
-\RequirePackage{hyperref}
-\hypersetup{
- colorlinks=true,
- linkcolor=linkcol,
- citecolor=citecol,
- filecolor=magenta,
- urlcolor=urlcol,
-}
-
-%For figure and table placement
-\RequirePackage{float}
-\floatplacement{figure}{H}
-\floatplacement{table}{H}
-
-%spacing between figure/ table and caption
-\setlength{\abovecaptionskip}{0.4in}
-\setlength{\belowcaptionskip}{0.2in}
-\captionnamefont{\footnotesize\sffamily\bfseries}
-\captiontitlefont{\footnotesize\sffamily}
-
-%define column options
-\setlength{\columnseprule}{1pt}
-\def\columnseprulecolor{\color{columnlinecol}}
-
-\setsubsubsecheadstyle{\small\color{headertextcol}\textbf}% Set \section style
-\setsecheadstyle{\small\color{headertextcol}}
-\setsecnumformat{}
-\def\sectionmark#1{\markboth{#1}{#1}}
-
-%-----------------------------------------------------
-
-\thispagestyle{empty}
-\definecolor{light-gray}{gray}{0.9}
-
-%biblatex options
-\RequirePackage[sorting=none,backend=biber]{biblatex}
-\renewcommand*{\bibfont}{\tiny}
-\bibliography{MyLibrary}
-\defbibheading{bibliography}[\bibname]{%
-\section*{#1}%
-\markboth{#1}{#1}}
-\AtBeginDocument{%
- \renewcommand{\bibname}{References}
-}
-
-%bring in the users information
-\author{Author One\textsuperscript{1} Author Two\textsuperscript{2}}
-\title{Using \texttt{posterdown} to generate reproducible conference posters
-via RMarkdown \textgreater{} Knitr \textgreater{} Markdown
-\textgreater{} Pandoc \textgreater{} Latex \textgreater{} PDF workflow}
-\counterwithout{section}{chapter}
-\makechapterstyle{mydefault}{
-\addtocounter{secnumdepth}{2}
-\setsecheadstyle{\centering\Large\color{headertextcol}\textbf}
-\setsubsecheadstyle{\itshape}
-\setsubsubsecheadstyle{\itshape}
-}
-
-\chapterstyle{mydefault}
-
-%define column spacing
-\setlength\columnsep{1in}
-
-\setlength\parindent{1em}
-\setlength\parskip{1em}
-\setlength\hangparas{0}
-
-%spacing after section head title
-\setaftersecskip{0.3in}
-\setbeforesecskip{1in}
-\setlength\textfloatsep{0.3in}
-\setlength\floatsep{0.3in}
-\setlength\intextsep{0.3in}
-
-\setstocksize{38in}{45in}
-\settrimmedsize{\stockheight}{\stockwidth}{*}
-\settypeblocksize{38in}{45in}{*}
-\setlrmargins{*}{*}{1}
-\setulmarginsandblock{2.5cm}{*}{*}
-\setmarginnotes{0em}{0cm}{0cm}
-\setlength{\footskip}{0cm}
-\setlength{\footnotesep}{0cm}
-\setlength{\headheight}{0pt}
-\setlength{\headsep}{0pt}
-\setlength{\trimtop}{0pt}
-\setlength{\trimedge}{0pt}
-\setlength{\uppermargin}{0pt}
-\checkandfixthelayout
-
-\mdfdefinestyle{brentsmdfstyle}{%
- backgroundcolor=titlebgcol,
- linecolor=columnlinecol,
- topline=false,
- leftline=false,
- rightline=false,
- linewidth=2mm}
-
-%Footnote to white
-\RequirePackage{footmisc}
-\def\footnotelayout{\centering\color{footnotetextcol}}
-
-% see https://stackoverflow.com/a/47122900
-\usepackage{color}
-\usepackage{fancyvrb}
-\newcommand{\VerbBar}{|}
-\newcommand{\VERB}{\Verb[commandchars=\\\{\}]}
-\DefineVerbatimEnvironment{Highlighting}{Verbatim}{commandchars=\\\{\}}
-% Add ',fontsize=\small' for more characters per line
-\usepackage{framed}
-\definecolor{shadecolor}{RGB}{248,248,248}
-\newenvironment{Shaded}{\begin{snugshade}}{\end{snugshade}}
-\newcommand{\KeywordTok}[1]{\textcolor[rgb]{0.13,0.29,0.53}{\textbf{#1}}}
-\newcommand{\DataTypeTok}[1]{\textcolor[rgb]{0.13,0.29,0.53}{#1}}
-\newcommand{\DecValTok}[1]{\textcolor[rgb]{0.00,0.00,0.81}{#1}}
-\newcommand{\BaseNTok}[1]{\textcolor[rgb]{0.00,0.00,0.81}{#1}}
-\newcommand{\FloatTok}[1]{\textcolor[rgb]{0.00,0.00,0.81}{#1}}
-\newcommand{\ConstantTok}[1]{\textcolor[rgb]{0.00,0.00,0.00}{#1}}
-\newcommand{\CharTok}[1]{\textcolor[rgb]{0.31,0.60,0.02}{#1}}
-\newcommand{\SpecialCharTok}[1]{\textcolor[rgb]{0.00,0.00,0.00}{#1}}
-\newcommand{\StringTok}[1]{\textcolor[rgb]{0.31,0.60,0.02}{#1}}
-\newcommand{\VerbatimStringTok}[1]{\textcolor[rgb]{0.31,0.60,0.02}{#1}}
-\newcommand{\SpecialStringTok}[1]{\textcolor[rgb]{0.31,0.60,0.02}{#1}}
-\newcommand{\ImportTok}[1]{#1}
-\newcommand{\CommentTok}[1]{\textcolor[rgb]{0.56,0.35,0.01}{\textit{#1}}}
-\newcommand{\DocumentationTok}[1]{\textcolor[rgb]{0.56,0.35,0.01}{\textbf{\textit{#1}}}}
-\newcommand{\AnnotationTok}[1]{\textcolor[rgb]{0.56,0.35,0.01}{\textbf{\textit{#1}}}}
-\newcommand{\CommentVarTok}[1]{\textcolor[rgb]{0.56,0.35,0.01}{\textbf{\textit{#1}}}}
-\newcommand{\OtherTok}[1]{\textcolor[rgb]{0.56,0.35,0.01}{#1}}
-\newcommand{\FunctionTok}[1]{\textcolor[rgb]{0.00,0.00,0.00}{#1}}
-\newcommand{\VariableTok}[1]{\textcolor[rgb]{0.00,0.00,0.00}{#1}}
-\newcommand{\ControlFlowTok}[1]{\textcolor[rgb]{0.13,0.29,0.53}{\textbf{#1}}}
-\newcommand{\OperatorTok}[1]{\textcolor[rgb]{0.81,0.36,0.00}{\textbf{#1}}}
-\newcommand{\BuiltInTok}[1]{#1}
-\newcommand{\ExtensionTok}[1]{#1}
-\newcommand{\PreprocessorTok}[1]{\textcolor[rgb]{0.56,0.35,0.01}{\textit{#1}}}
-\newcommand{\AttributeTok}[1]{\textcolor[rgb]{0.77,0.63,0.00}{#1}}
-\newcommand{\RegionMarkerTok}[1]{#1}
-\newcommand{\InformationTok}[1]{\textcolor[rgb]{0.56,0.35,0.01}{\textbf{\textit{#1}}}}
-\newcommand{\WarningTok}[1]{\textcolor[rgb]{0.56,0.35,0.01}{\textbf{\textit{#1}}}}
-\newcommand{\AlertTok}[1]{\textcolor[rgb]{0.94,0.16,0.16}{#1}}
-\newcommand{\ErrorTok}[1]{\textcolor[rgb]{0.64,0.00,0.00}{\textbf{#1}}}
-\newcommand{\NormalTok}[1]{#1}
-
-% choose font family
-\RequirePackage{courier}
-\renewcommand*\familydefault{\sfdefault}
-\newpagecolor{posterbgcol}
-
-%begin the document
-\begin{document}
-
-\begin{mdframed}[style=brentsmdfstyle]
-
-%sets footnote to be white hopefully
-\renewcommand\footnoterule{}
-\renewcommand{\thempfootnote}{\footnotesize\color{footnotetextcol}{\arabic{mpfootnote}}}
-
-% group which adds title author and other infor
-% Used instead of \maketitle for better spacing options
-\begingroup
- \centering
- \color{titletextcol}
-\vspace{0.5in}
- \Huge{Using \texttt{posterdown} to generate reproducible conference posters
-via RMarkdown \textgreater{} Knitr \textgreater{} Markdown
-\textgreater{} Pandoc \textgreater{} Latex \textgreater{} PDF workflow} \\[0.3in]
- \color{authortextcol} \Large{Author One\textsuperscript{1} Author Two\textsuperscript{2}} \\[0.2in]
- \color{affiliationtextcol} \large{\textsuperscript{1}Department of Poster Layouts, University of Markdown;
-\textsuperscript{2}Deparment of Another Institution, Institution
-University} \par
- \vspace{0.2in}
-
-% end title section -------------------
- \endgroup
-\end{mdframed}
-
-% Brgin body of poster
-\begin{adjmulticols*}{3}{10mm}{10mm}
-\normalsize{
-\color{bodytextcol}
-\section{Introduction}\label{introduction}
-
-Welcome to \texttt{posterdown} ! This is my attempt to provide a
-semi-smooth workflow for those who wish to take their \texttt{RMarkdown}
-skills to the conference world. Many creature comforts from
-\texttt{RMarkdown} are available in this package such as
-\texttt{Markdown} section notation, figure captioning, and even
-citations like this one \autocite{holden_identifying_2012} The rest of
-this example poster will show how you can insert typical conference
-poster features into your own document.
-
-\section{Study Site}\label{study-site}
-
-Here is a map made to show the study site using \texttt{ggplot2},
-\texttt{ggspatial}, and \texttt{sf}. Lorem ipsum dolor sit amet,
-\autocite{middleton_geological_nodate} consectetur adipiscing elit, sed
-do eiusmod tempor incididunt ut labore et dolore magna aliqua. Phasellus
-vestibulum lorem sed risus ultricies tristique nulla. Mauris vitae
-ultricies leo integer malesuada nunc vel risus commodo. Suspendisse
-potenti nullam ac tortor vitae. Enim nunc faucibus a pellentesque sit
-amet porttitor eget. \vspace{15mm}
-
-\begin{figure}
-
-{\centering \includegraphics[width=1\linewidth]{skeleton_files/figure-latex/unnamed-chunk-2-1}
-
-}
-
-\caption{Here is an example of a firgure using the iris dataset and ggplot2}\label{fig:unnamed-chunk-2}
-\end{figure}
-
-\section{Objectives}\label{objectives}
-
-\large
-
-\begin{enumerate}
-\def\labelenumi{\arabic{enumi}.}
-\tightlist
-\item
- Easy to use reproducible poster design.
-\item
- Integration with \texttt{RMarkdown}.
-\item
- Easy transition from \texttt{posterdown} to \texttt{thesisdown} or
- \texttt{rticles}
-\end{enumerate}
-
-\small
-
-\section{Methods}\label{methods}
-
-This package uses the same workflow approach as the \texttt{RMarkdown}
-you know and love. Basically it goes from RMarkdown \textgreater{} Knitr
-\textgreater{} Markdown \textgreater{} Pandoc \textgreater{} Latex
-\textgreater{} PDF
-
-\section{Results}\label{results}
-
-Usually you want to have a nice table displaying some important results
-that you have calcualated. In posterdown this is as easy as using the
-\texttt{kable} table formatting you are probably use to as per typical
-\texttt{RMarkdown} formatting. I suggesting checking out the
-\texttt{kableExtra} package and its in depth documentation on
-customizing these tables found
-\href{https://haozhu233.github.io/kableExtra/awesome_table_in_pdf.pdf}{here}.
-
-\rowcolors{2}{gray!6}{white}
-
-\begin{table}
-
-\caption{\label{tab:unnamed-chunk-3}Tables are a breeze with Kable and Kable extra package!}
-\centering
-\fontsize{25}{27}\selectfont
-\begin{tabu} to \linewidth {>{\centering}X>{\centering}X>{\centering}X>{\centering}X>{\centering}X}
-\hiderowcolors
-\toprule
-Sepal.Length & Sepal.Width & Petal.Length & Petal.Width & Species\\
-\midrule
-\showrowcolors
-5.1 & 3.5 & 1.4 & 0.2 & setosa\\
-4.9 & 3.0 & 1.4 & 0.2 & setosa\\
-4.7 & 3.2 & 1.3 & 0.2 & setosa\\
-4.6 & 3.1 & 1.5 & 0.2 & setosa\\
-\bottomrule
-\end{tabu}
-\end{table}
-
-\rowcolors{2}{white}{white}
-
-\vspace{1in}
-
-\begin{figure}
-
-{\centering \includegraphics[width=0.75\linewidth]{skeleton_files/figure-latex/unnamed-chunk-4-1}
-
-}
-
-\caption{A typical plot using ggplot using the classic iris dataset.}\label{fig:unnamed-chunk-4}
-\end{figure}
-
-\vspace{1in}
-
-\begin{figure}
-
-{\centering \includegraphics[width=0.85\linewidth]{skeleton_files/figure-latex/unnamed-chunk-5-1}
-
-}
-
-\caption{Another typical plot using ggplot, this time with a different theme and r code chunk options for fig.width and fig.height.}\label{fig:unnamed-chunk-5}
-\end{figure}
-
-\vspace{1in}
-
-\begin{Shaded}
-\begin{Highlighting}[]
-\CommentTok{# Here is some code for people}
-\CommentTok{# to look at and be in awe of!!!!}
-\KeywordTok{library}\NormalTok{(ggplot2)}
-\KeywordTok{library}\NormalTok{(ggthemes)}
-
-\KeywordTok{ggplot}\NormalTok{(}\DataTypeTok{data=}\NormalTok{iris,}
- \KeywordTok{aes}\NormalTok{(}\DataTypeTok{x =}\NormalTok{ Sepal.Width,}
- \DataTypeTok{y =}\NormalTok{ Sepal.Length,}
- \DataTypeTok{colour =}\NormalTok{ Species)) }\OperatorTok{+}
-\StringTok{ }\KeywordTok{geom_point}\NormalTok{() }\OperatorTok{+}
-\StringTok{ }\KeywordTok{theme_stata}\NormalTok{() }\OperatorTok{+}
-\StringTok{ }\OtherTok{NULL}
-\end{Highlighting}
-\end{Shaded}
-
-\begin{figure}
-
-{\centering \includegraphics[width=0.8\linewidth]{skeleton_files/figure-latex/unnamed-chunk-6-1}
-
-}
-
-\caption{Another figure showing how base R plots might look on this poster!}\label{fig:unnamed-chunk-6}
-\end{figure}
-
-\section{Next Steps}\label{next-steps}
-
-There is still \textbf{A LOT} of work to do on this package which
-include (but are note limited to):
-
-\begin{itemize}
-\tightlist
-\item
- Better softcoding for front end user options in YAML
-\item
- Images in the title section for logo placement which is a common
- attribut to posters as far as I have come to know.
-\item
- Figure out compatiability with \texttt{natbib} which wasn't working
- during the initial set up.
-\item
- MUCH BETTER PACKAGE DOCUMENTATION. For example, there is nothing in
- the README\ldots{}
-\item
- Include References section only if initiated by the user like in
- RMarkdown.
-\end{itemize}
-
-\small
-\printbibliography
-}
-\end{adjmulticols*}
-%end the poster
-\end{document}
diff --git a/inst/rmarkdown/templates/posterdown_pdf/skeleton/skeleton_cache/latex/__packages b/inst/rmarkdown/templates/posterdown_pdf/skeleton/skeleton_cache/latex/__packages
deleted file mode 100644
index d44ddce..0000000
--- a/inst/rmarkdown/templates/posterdown_pdf/skeleton/skeleton_cache/latex/__packages
+++ /dev/null
@@ -1,7 +0,0 @@
-base
-methods
-datasets
-utils
-grDevices
-graphics
-stats
diff --git a/inst/rmarkdown/templates/posterdown_pdf/skeleton/skeleton_cache/latex/unnamed-chunk-2_4842138fc201a3e8a60faa572fee2db3.RData b/inst/rmarkdown/templates/posterdown_pdf/skeleton/skeleton_cache/latex/unnamed-chunk-2_4842138fc201a3e8a60faa572fee2db3.RData
deleted file mode 100644
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