Lots of updates
hyperref support as well as footnoes for authors.
diff --git a/.Rproj.user/5271889B/pcs/files-pane.pper b/.Rproj.user/5271889B/pcs/files-pane.pper
index 2a5f33c..0a64530 100644
--- a/.Rproj.user/5271889B/pcs/files-pane.pper
+++ b/.Rproj.user/5271889B/pcs/files-pane.pper
@@ -1,5 +1,5 @@
{
- "path" : "~/GitHub/posterdown",
+ "path" : "~/GitHub/posterdown/inst/rmarkdown/templates/posterdown_memoir",
"sortOrder" : [
{
"ascending" : false,
diff --git a/.Rproj.user/5271889B/pcs/source-pane.pper b/.Rproj.user/5271889B/pcs/source-pane.pper
index 9efb51b..1743e40 100644
--- a/.Rproj.user/5271889B/pcs/source-pane.pper
+++ b/.Rproj.user/5271889B/pcs/source-pane.pper
@@ -1,3 +1,3 @@
{
- "activeTab" : -1
+ "activeTab" : 0
}
\ No newline at end of file
diff --git a/.Rproj.user/5271889B/pcs/windowlayoutstate.pper b/.Rproj.user/5271889B/pcs/windowlayoutstate.pper
index dd78fba..39209c8 100644
--- a/.Rproj.user/5271889B/pcs/windowlayoutstate.pper
+++ b/.Rproj.user/5271889B/pcs/windowlayoutstate.pper
@@ -2,7 +2,7 @@
"left" : {
"panelheight" : 778,
"splitterpos" : 323,
- "topwindowstate" : "HIDE",
+ "topwindowstate" : "NORMAL",
"windowheight" : 816
},
"right" : {
diff --git a/.Rproj.user/5271889B/pcs/workbench-pane.pper b/.Rproj.user/5271889B/pcs/workbench-pane.pper
index 3eb507b..b15bf23 100644
--- a/.Rproj.user/5271889B/pcs/workbench-pane.pper
+++ b/.Rproj.user/5271889B/pcs/workbench-pane.pper
@@ -1,6 +1,6 @@
{
"TabSet1" : 3,
- "TabSet2" : 3,
+ "TabSet2" : 0,
"TabZoom" : {
}
}
\ No newline at end of file
diff --git a/.Rproj.user/5271889B/persistent-state b/.Rproj.user/5271889B/persistent-state
index ebe6faf..b75c2cf 100644
--- a/.Rproj.user/5271889B/persistent-state
+++ b/.Rproj.user/5271889B/persistent-state
@@ -1,8 +1,8 @@
build-last-errors="[]"
build-last-errors-base-dir="~/GitHub/posterdown/"
-build-last-outputs="[{\"output\":\"==> devtools::document(roclets=c('rd', 'collate', 'namespace'))\\n\\n\",\"type\":0},{\"output\":\"Updating posterdown documentation\\r\\n\",\"type\":2},{\"output\":\"Writing NAMESPACE\\r\\n\",\"type\":1},{\"output\":\"Loading posterdown\\r\\n\",\"type\":2},{\"output\":\"Writing NAMESPACE\\r\\n\",\"type\":1},{\"output\":\"Documentation completed\\n\\n\",\"type\":1},{\"output\":\"==> Rcmd.exe INSTALL --preclean --no-multiarch --with-keep.source posterdown\\n\\n\",\"type\":0},{\"output\":\"* installing to library 'C:/Users/Brent Thorne/Documents/R/win-library/3.5'\\r\\n\",\"type\":1},{\"output\":\"* installing *source* package 'posterdown' ...\\r\\n\",\"type\":1},{\"output\":\"\",\"type\":1},{\"output\":\"** R\\r\\n\",\"type\":1},{\"output\":\"** inst\\r\\n\",\"type\":1},{\"output\":\"\",\"type\":1},{\"output\":\"** byte-compile and prepare package for lazy loading\\r\\n\",\"type\":1},{\"output\":\"\",\"type\":1},{\"output\":\"** help\\r\\n\",\"type\":1},{\"output\":\"\",\"type\":1},{\"output\":\"*** installing help indices\\r\\n\",\"type\":1},{\"output\":\"\",\"type\":1},{\"output\":\" converting help for package 'posterdown'\\r\\n\",\"type\":1},{\"output\":\"\",\"type\":1},{\"output\":\" finding HTML links ...\",\"type\":1},{\"output\":\" posterdown html \\r\\n\",\"type\":1},{\"output\":\" posterdown_memoir html \\r\\n\",\"type\":1},{\"output\":\"\",\"type\":1},{\"output\":\" done\\r\\n\",\"type\":1},{\"output\":\"** building package indices\\r\\n\",\"type\":1},{\"output\":\"\",\"type\":1},{\"output\":\"** testing if installed package can be loaded\\r\\n\",\"type\":1},{\"output\":\"\",\"type\":1},{\"output\":\"* DONE (posterdown)\\r\\n\",\"type\":1},{\"output\":\"\",\"type\":1},{\"output\":\"In R CMD INSTALL\\r\\n\",\"type\":1},{\"output\":\"\",\"type\":1}]"
-compile_pdf_state="{\"errors\":[],\"output\":\"\",\"running\":false,\"tab_visible\":false,\"target_file\":\"\"}"
+build-last-outputs="[{\"output\":\"==> devtools::document(roclets=c('rd', 'collate', 'namespace'))\\n\\n\",\"type\":0},{\"output\":\"Updating posterdown documentation\\r\\n\",\"type\":2},{\"output\":\"Writing NAMESPACE\\r\\n\",\"type\":1},{\"output\":\"Loading posterdown\\r\\n\",\"type\":2},{\"output\":\"Writing NAMESPACE\\r\\n\",\"type\":1},{\"output\":\"Documentation completed\\n\\n\",\"type\":1},{\"output\":\"==> Rcmd.exe INSTALL --preclean --no-multiarch --with-keep.source posterdown\\n\\n\",\"type\":0},{\"output\":\"* installing to library 'C:/Users/Brent Thorne/Documents/R/win-library/3.5'\\r\\n\",\"type\":1},{\"output\":\"* installing *source* package 'posterdown' ...\\r\\n\",\"type\":1},{\"output\":\"\",\"type\":1},{\"output\":\"** R\\r\\n\",\"type\":1},{\"output\":\"** inst\\r\\n\",\"type\":1},{\"output\":\"\",\"type\":1},{\"output\":\"** byte-compile and prepare package for lazy loading\\r\\n\",\"type\":1},{\"output\":\"\",\"type\":1},{\"output\":\"** help\\r\\n\",\"type\":1},{\"output\":\"\",\"type\":1},{\"output\":\"*** installing help indices\\r\\n\",\"type\":1},{\"output\":\"\",\"type\":1},{\"output\":\" converting help for package 'posterdown'\\r\\n\",\"type\":1},{\"output\":\" posterdown html \\r\\n\",\"type\":1},{\"output\":\" posterdown_memoir html \",\"type\":1},{\"output\":\" finding HTML links ... done\\r\\n\",\"type\":1},{\"output\":\"\",\"type\":1},{\"output\":\"\\r\\n\",\"type\":1},{\"output\":\"\",\"type\":1},{\"output\":\"** building package indices\\r\\n\",\"type\":1},{\"output\":\"** testing if installed package can be loaded\\r\\n\",\"type\":1},{\"output\":\"\",\"type\":1},{\"output\":\"* DONE (posterdown)\\r\\n\",\"type\":1},{\"output\":\"\",\"type\":1},{\"output\":\"In R CMD INSTALL\\r\\n\",\"type\":1},{\"output\":\"\",\"type\":1}]"
+compile_pdf_state="{\"errors\":[{\"column\":1,\"line\":119,\"log_line\":1668,\"log_path\":\"~/GitHub/posterdown/inst/rmarkdown/templates/posterdown_memoir/resources/template.log\",\"message\":\"\\\\marginparsep is zero or negative on input line 119.\",\"path\":\"c:/Users/Brent Thorne/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/pgf/basiclayer/pgfcore.sty\",\"show_error_list\":true,\"type\":1},{\"column\":1,\"line\":119,\"log_line\":1671,\"log_path\":\"~/GitHub/posterdown/inst/rmarkdown/templates/posterdown_memoir/resources/template.log\",\"message\":\"\\\\marginparwidth is zero or negative on input line 119.\",\"path\":\"c:/Users/Brent Thorne/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/pgf/basiclayer/pgfcore.sty\",\"show_error_list\":true,\"type\":1},{\"column\":1,\"line\":123,\"log_line\":1729,\"log_path\":\"~/GitHub/posterdown/inst/rmarkdown/templates/posterdown_memoir/resources/template.log\",\"message\":\"Overfull \\\\hbox (55.84848pt too wide) in paragraph at lines 123--126\",\"path\":\"c:/Users/Brent Thorne/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/pgf/basiclayer/pgfcore.sty\",\"show_error_list\":true,\"type\":2},{\"column\":1,\"line\":151,\"log_line\":1874,\"log_path\":\"~/GitHub/posterdown/inst/rmarkdown/templates/posterdown_memoir/resources/template.log\",\"message\":\"Empty bibliography on input line 151.\",\"path\":\"c:/Users/Brent Thorne/AppData/Roaming/TinyTeX/texmf-dist/tex/latex/pgf/basiclayer/pgfcore.sty\",\"show_error_list\":true,\"type\":1}],\"output\":\"Running pdflatex.exe on template.tex...completed\\n\\nCreated PDF: ~/GitHub/posterdown/inst/rmarkdown/templates/posterdown_memoir/resources/template.pdf\\n\\nIssues: 3 warnings, 1 badbox\\n[Compile PDF Stopped]\\n\",\"running\":false,\"tab_visible\":true,\"target_file\":\"~/GitHub/posterdown/inst/rmarkdown/templates/posterdown_memoir/resources/template.tex\"}"
files.monitored-path=""
find-in-files-state="{\"handle\":\"\",\"input\":\"\",\"path\":\"\",\"regex\":true,\"results\":{\"file\":[],\"line\":[],\"lineValue\":[],\"matchOff\":[],\"matchOn\":[]},\"running\":false}"
-imageDirtyState="0"
-saveActionState="0"
+imageDirtyState="1"
+saveActionState="-1"
diff --git a/.Rproj.user/5271889B/sources/per/t/90E44B40 b/.Rproj.user/5271889B/sources/per/t/90E44B40
new file mode 100644
index 0000000..edef751
--- /dev/null
+++ b/.Rproj.user/5271889B/sources/per/t/90E44B40
@@ -0,0 +1,22 @@
+{
+ "collab_server" : "",
+ "contents" : "",
+ "created" : 1544112566543.000,
+ "dirty" : false,
+ "encoding" : "UTF-8",
+ "folds" : "",
+ "hash" : "1850734637",
+ "id" : "90E44B40",
+ "lastKnownWriteTime" : 1544106697,
+ "last_content_update" : 1544106697,
+ "path" : "~/GitHub/posterdown/inst/rmarkdown/templates/posterdown_memoir/template.yaml",
+ "project_path" : "inst/rmarkdown/templates/posterdown_memoir/template.yaml",
+ "properties" : {
+ "cursorPosition" : "4,0",
+ "scrollLine" : "0"
+ },
+ "relative_order" : 2,
+ "source_on_save" : false,
+ "source_window" : "",
+ "type" : "yaml"
+}
\ No newline at end of file
diff --git a/.Rproj.user/5271889B/sources/per/t/90E44B40-contents b/.Rproj.user/5271889B/sources/per/t/90E44B40-contents
new file mode 100644
index 0000000..c2ebc68
--- /dev/null
+++ b/.Rproj.user/5271889B/sources/per/t/90E44B40-contents
@@ -0,0 +1,4 @@
+name: Posterdown Memoir L38 X W45 PDF
+description: >
+ Template for creating R Markdown based PDF via Latex and Memoir
+create_dir: true
diff --git a/.Rproj.user/5271889B/sources/per/t/950DD430 b/.Rproj.user/5271889B/sources/per/t/950DD430
new file mode 100644
index 0000000..92809c1
--- /dev/null
+++ b/.Rproj.user/5271889B/sources/per/t/950DD430
@@ -0,0 +1,22 @@
+{
+ "collab_server" : "",
+ "contents" : "",
+ "created" : 1544112118287.000,
+ "dirty" : false,
+ "encoding" : "UTF-8",
+ "folds" : "",
+ "hash" : "3352023408",
+ "id" : "950DD430",
+ "lastKnownWriteTime" : 1544118983,
+ "last_content_update" : 1544118983851,
+ "path" : "~/GitHub/posterdown/inst/rmarkdown/templates/posterdown_memoir/resources/template.tex",
+ "project_path" : "inst/rmarkdown/templates/posterdown_memoir/resources/template.tex",
+ "properties" : {
+ "cursorPosition" : "145,39",
+ "scrollLine" : "140"
+ },
+ "relative_order" : 1,
+ "source_on_save" : false,
+ "source_window" : "",
+ "type" : "tex"
+}
\ No newline at end of file
diff --git a/.Rproj.user/5271889B/sources/per/t/950DD430-contents b/.Rproj.user/5271889B/sources/per/t/950DD430-contents
new file mode 100644
index 0000000..d0387be
--- /dev/null
+++ b/.Rproj.user/5271889B/sources/per/t/950DD430-contents
@@ -0,0 +1,171 @@
+%brent's poster layout :)
+
+\documentclass[article,30pt,extrafontsizes]{memoir}
+
+%utf-8 seems to be important
+\usepackage[utf8]{inputenc}
+\usepackage[T1]{fontenc}
+\usepackage{palatino}
+\usepackage{multicol}
+\usepackage{graphicx}
+\usepackage{blindtext}
+\usepackage[svgnames,table]{xcolor}
+\usepackage[framemethod=tikz]{mdframed}
+\usepackage{color}
+\usepackage{geometry}
+\usepackage{adjmulticol}
+
+%For kable extra package :)
+\usepackage{booktabs}
+\usepackage{longtable}
+\usepackage{array}
+\usepackage{multirow}
+\usepackage{wrapfig}
+\usepackage{float}
+\usepackage{colortbl}
+\usepackage{pdflscape}
+\usepackage{tabu}
+\usepackage{threeparttable}
+\usepackage{threeparttablex}
+\usepackage[normalem]{ulem}
+\usepackage{makecell}
+
+\usepackage{hyperref}
+\hypersetup{
+ colorlinks=true,
+ linkcolor=blue,
+ citecolor=red,
+ filecolor=magenta,
+ urlcolor=cyan,
+}
+
+
+%For figure and table placement
+\usepackage{float}
+\floatplacement{figure}{H}
+\floatplacement{table}{H}
+
+%spacing between figure/ table and caption
+\setlength{\abovecaptionskip}{0.4in}
+\setlength{\belowcaptionskip}{0.2in}
+\captionnamefont{\footnotesize\sffamily\bfseries}
+\captiontitlefont{\footnotesize\sffamily}
+
+%define column options
+\setlength{\columnseprule}{1pt}
+\def\columnseprulecolor{\color{red}}
+\setsubsubsecheadstyle{\small\color{red}\textbf}% Set \section style
+\setsecheadstyle{\small\color{red}}
+\setsecnumformat{}
+\def\sectionmark#1{\markboth{#1}{#1}}
+
+%-----------------------------------------------------
+
+\thispagestyle{empty}
+\definecolor{light-gray}{gray}{0.9}
+
+%biblatex options
+\usepackage[sorting=none,backend=biber]{biblatex}
+\renewcommand*{\bibfont}{\tiny}
+\bibliography{$bibliography$}
+\defbibheading{bibliography}[\bibname]{%
+\section*{#1}%
+\markboth{#1}{#1}}
+\AtBeginDocument{%
+ \renewcommand{\bibname}{References}
+}
+
+%bring in the users information
+\author{$author$}
+\title{$title$}
+\counterwithout{section}{chapter}
+\makechapterstyle{mydefault}{
+\addtocounter{secnumdepth}{2}
+\setsecheadstyle{\Large\color{red}\textbf}
+\setsubsecheadstyle{\itshape}
+\setsubsubsecheadstyle{\itshape}
+}
+
+\chapterstyle{mydefault}
+
+%define column spacing
+\setlength\columnsep{1in}
+
+\setlength\parindent{1em}
+\setlength\parskip{1em}
+\setlength\hangparas{0}
+
+%spacing after section head title
+\setaftersecskip{0.3in}
+\setbeforesecskip{1in}
+\setlength\textfloatsep{0.3in}
+\setlength\floatsep{0.3in}
+\setlength\intextsep{0.3in}
+
+\setstocksize{38in}{45in}
+\settrimmedsize{\stockheight}{\stockwidth}{*}
+\settypeblocksize{38in}{45in}{*}
+\setlrmargins{*}{*}{1}
+\setulmarginsandblock{2.5cm}{*}{*}
+\setmarginnotes{0em}{0cm}{0cm}
+\setlength{\footskip}{0cm}
+\setlength{\footnotesep}{0cm}
+\setlength{\headheight}{0pt}
+\setlength{\headsep}{0pt}
+\setlength{\trimtop}{0pt}
+\setlength{\trimedge}{0pt}
+\setlength{\uppermargin}{0pt}
+\checkandfixthelayout
+
+\definecolor{myframecolour}{HTML}{00004d}
+
+\mdfdefinestyle{brentsmdfstyle}{%
+ backgroundcolor=myframecolour,
+ linecolor=Red,
+ topline=false,
+ leftline=false,
+ rightline=false,
+ linewidth=2mm,
+ settings={\definecolor{linkcolor}{RGB}{255,255,255}}}
+
+%Footnote to white
+\usepackage{footmisc}
+\def\footnotelayout{\centering\color{white}}
+
+% see https://stackoverflow.com/a/47122900
+$if(highlighting-macros)$
+$highlighting-macros$
+$endif$
+
+%begin the document
+\begin{document}
+
+\begin{mdframed}[style=brentsmdfstyle]
+%sets footnote to be white hoprefully
+\renewcommand\footnoterule{}
+\renewcommand{\thempfootnote}{\footnotesize\color{red}{\arabic{mpfootnote}}}
+
+% group which adds title author and other infor
+% Used instead of \maketitle for better spacing options
+\begingroup
+ \centering
+ \color{White}
+\vspace{0.5in}
+ \Huge\textbf{$title$}\\[0.3in]
+ \color{cyan} \Large{\textbf{$author$}} \par
+ \vspace{0.2in}
+
+% end title section -------------------
+ \endgroup
+\end{mdframed}
+
+% Brgin body of poster
+\begin{adjmulticols*}{3}{10mm}{10mm}
+\normalsize{
+\color{black}
+$body$
+\printbibliography
+}
+\end{adjmulticols*}
+%end the poster
+\end{document}
diff --git a/.Rproj.user/5271889B/sources/prop/5781AC46 b/.Rproj.user/5271889B/sources/prop/5781AC46
index ce7ff1a..8054aa9 100644
--- a/.Rproj.user/5271889B/sources/prop/5781AC46
+++ b/.Rproj.user/5271889B/sources/prop/5781AC46
@@ -1,4 +1,4 @@
{
- "cursorPosition" : "103,57",
- "scrollLine" : "86"
+ "cursorPosition" : "193,0",
+ "scrollLine" : "180"
}
\ No newline at end of file
diff --git a/.Rproj.user/5271889B/sources/prop/7A49AA51 b/.Rproj.user/5271889B/sources/prop/7A49AA51
index 9013709..c3507bb 100644
--- a/.Rproj.user/5271889B/sources/prop/7A49AA51
+++ b/.Rproj.user/5271889B/sources/prop/7A49AA51
@@ -1,4 +1,4 @@
{
- "cursorPosition" : "2,64",
+ "cursorPosition" : "4,0",
"scrollLine" : "0"
}
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diff --git a/.Rproj.user/5271889B/sources/prop/D0048985 b/.Rproj.user/5271889B/sources/prop/D0048985
index ee949e1..3c1ccb8 100644
--- a/.Rproj.user/5271889B/sources/prop/D0048985
+++ b/.Rproj.user/5271889B/sources/prop/D0048985
@@ -1,4 +1,4 @@
{
- "cursorPosition" : "297,26",
- "scrollLine" : "298"
+ "cursorPosition" : "189,116",
+ "scrollLine" : "182"
}
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diff --git a/.Rproj.user/5271889B/sources/prop/FA5E3F8 b/.Rproj.user/5271889B/sources/prop/FA5E3F8
index 3c4eb07..a662063 100644
--- a/.Rproj.user/5271889B/sources/prop/FA5E3F8
+++ b/.Rproj.user/5271889B/sources/prop/FA5E3F8
@@ -1,4 +1,4 @@
{
- "cursorPosition" : "4,37",
- "scrollLine" : "0"
+ "cursorPosition" : "17,427",
+ "scrollLine" : "14"
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diff --git a/.Rproj.user/5271889B/sources/prop/FDA71E49 b/.Rproj.user/5271889B/sources/prop/FDA71E49
index 106fdb4..8a53f53 100644
--- a/.Rproj.user/5271889B/sources/prop/FDA71E49
+++ b/.Rproj.user/5271889B/sources/prop/FDA71E49
@@ -1,4 +1,4 @@
{
- "cursorPosition" : "109,29",
- "scrollLine" : "0"
+ "cursorPosition" : "145,39",
+ "scrollLine" : "140"
}
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diff --git a/.Rproj.user/shared/notebooks/354EF6B8-skeleton/1/s/chunks.json b/.Rproj.user/shared/notebooks/354EF6B8-skeleton/1/s/chunks.json
new file mode 100644
index 0000000..f84071c
--- /dev/null
+++ b/.Rproj.user/shared/notebooks/354EF6B8-skeleton/1/s/chunks.json
@@ -0,0 +1 @@
+{"chunk_definitions":[],"doc_write_time":1544111037}
\ No newline at end of file
diff --git a/.Rproj.user/shared/notebooks/paths b/.Rproj.user/shared/notebooks/paths
index a39694d..2cc3b51 100644
--- a/.Rproj.user/shared/notebooks/paths
+++ b/.Rproj.user/shared/notebooks/paths
@@ -1,3 +1,4 @@
+C:/Users/Brent Thorne/Documents/GitHub/Thesis/RS_Journal/RS_Journal.Rmd="7C695256"
C:/Users/Brent Thorne/Documents/GitHub/posterdown/DESCRIPTION="F3DEB317"
C:/Users/Brent Thorne/Documents/GitHub/posterdown/NAMESPACE="9BC06DB0"
C:/Users/Brent Thorne/Documents/GitHub/posterdown/inst/rmarkdown/templates/posterdown_memoir/resources/template.tex="AAB70749"