Update to reveal.js 4.6.1

Change-Id: I566737c50b93dd8c094ad3c3fa59865260b3b4ba
diff --git a/inst/reveal.js-4.6.1/plugin/math/katex.js b/inst/reveal.js-4.6.1/plugin/math/katex.js
new file mode 100644
index 0000000..a8b47c4
--- /dev/null
+++ b/inst/reveal.js-4.6.1/plugin/math/katex.js
@@ -0,0 +1,96 @@
+/**
+ * A plugin which enables rendering of math equations inside
+ * of reveal.js slides. Essentially a thin wrapper for KaTeX.
+ *
+ * @author Hakim El Hattab
+ * @author Gerhard Burger
+ */
+export const KaTeX = () => {
+	let deck;
+
+	let defaultOptions = {
+		version: 'latest',
+		delimiters: [
+			{left: '$$', right: '$$', display: true}, // Note: $$ has to come before $
+			{left: '$', right: '$', display: false},
+			{left: '\\(', right: '\\)', display: false},
+			{left: '\\[', right: '\\]', display: true}
+		],
+		ignoredTags: ['script', 'noscript', 'style', 'textarea', 'pre']
+	}
+
+	const loadCss = src => {
+		let link = document.createElement('link');
+		link.rel = 'stylesheet';
+		link.href = src;
+		document.head.appendChild(link);
+	};
+
+	/**
+	 * Loads a JavaScript file and returns a Promise for when it is loaded
+	 * Credits: https://aaronsmith.online/easily-load-an-external-script-using-javascript/
+	 */
+	const loadScript = src => {
+		return new Promise((resolve, reject) => {
+			const script = document.createElement('script')
+			script.type = 'text/javascript'
+			script.onload = resolve
+			script.onerror = reject
+			script.src = src
+			document.head.append(script)
+		})
+	};
+
+	async function loadScripts(urls) {
+		for(const url of urls) {
+			await loadScript(url);
+		}
+	}
+
+	return {
+		id: 'katex',
+
+		init: function (reveal) {
+
+			deck = reveal;
+
+			let revealOptions = deck.getConfig().katex || {};
+
+			let options = {...defaultOptions, ...revealOptions};
+			const {local, version, extensions, ...katexOptions} = options;
+
+			let baseUrl = options.local || 'https://cdn.jsdelivr.net/npm/katex';
+			let versionString = options.local ? '' : '@' + options.version;
+
+			let cssUrl = baseUrl + versionString + '/dist/katex.min.css';
+			let katexUrl = baseUrl + versionString + '/dist/katex.min.js';
+			let mhchemUrl = baseUrl + versionString + '/dist/contrib/mhchem.min.js'
+			let karUrl = baseUrl + versionString + '/dist/contrib/auto-render.min.js';
+
+			let katexScripts = [katexUrl];
+			if(options.extensions && options.extensions.includes("mhchem")) {
+				katexScripts.push(mhchemUrl);
+			}
+			katexScripts.push(karUrl);
+
+			const renderMath = () => {
+				renderMathInElement(reveal.getSlidesElement(), katexOptions);
+				deck.layout();
+			}
+
+			loadCss(cssUrl);
+
+			// For some reason dynamically loading with defer attribute doesn't result in the expected behavior, the below code does
+			loadScripts(katexScripts).then(() => {
+				if( deck.isReady() ) {
+					renderMath();
+				}
+				else {
+					deck.on( 'ready', renderMath.bind( this ) );
+				}
+			});
+
+		}
+	}
+
+};
diff --git a/inst/reveal.js-4.6.1/plugin/math/math.esm.js b/inst/reveal.js-4.6.1/plugin/math/math.esm.js
new file mode 100644
index 0000000..f25ff60
--- /dev/null
+++ b/inst/reveal.js-4.6.1/plugin/math/math.esm.js
@@ -0,0 +1,6 @@
+const t=()=>{let t,e={messageStyle:"none",tex2jax:{inlineMath:[["$","$"],["\\(","\\)"]],skipTags:["script","noscript","style","textarea","pre"]},skipStartupTypeset:!0};return{id:"mathjax2",init:function(a){t=a;let n=t.getConfig().mathjax2||t.getConfig().math||{},i={...e,...n},s=(i.mathjax||"https://cdn.jsdelivr.net/npm/mathjax@2/MathJax.js")+"?config="+(i.config||"TeX-AMS_HTML-full");i.tex2jax={...e.tex2jax,...n.tex2jax},i.mathjax=i.config=null,function(t,e){let a=document.querySelector("head"),n=document.createElement("script");n.type="text/javascript",n.src=t;let i=()=>{"function"==typeof e&&(e.call(),e=null)};n.onload=i,n.onreadystatechange=()=>{"loaded"===this.readyState&&i()},a.appendChild(n)}(s,(function(){MathJax.Hub.Config(i),MathJax.Hub.Queue(["Typeset",MathJax.Hub,t.getRevealElement()]),MathJax.Hub.Queue(t.layout),t.on("slidechanged",(function(t){MathJax.Hub.Queue(["Typeset",MathJax.Hub,t.currentSlide])}))}))}}},e=t;
+/*!
+ * This plugin is a wrapper for the MathJax2,
+ * MathJax3 and KaTeX typesetter plugins.
+ */
+var a=Plugin=Object.assign(e(),{KaTeX:()=>{let t,e={version:"latest",delimiters:[{left:"$$",right:"$$",display:!0},{left:"$",right:"$",display:!1},{left:"\\(",right:"\\)",display:!1},{left:"\\[",right:"\\]",display:!0}],ignoredTags:["script","noscript","style","textarea","pre"]};const a=t=>new Promise(((e,a)=>{const n=document.createElement("script");n.type="text/javascript",n.onload=e,n.onerror=a,n.src=t,document.head.append(n)}));return{id:"katex",init:function(n){t=n;let i=t.getConfig().katex||{},s={...e,...i};const{local:l,version:o,extensions:r,...c}=s;let d=s.local||"https://cdn.jsdelivr.net/npm/katex",p=s.local?"":"@"+s.version,u=d+p+"/dist/katex.min.css",h=d+p+"/dist/contrib/mhchem.min.js",x=d+p+"/dist/contrib/auto-render.min.js",m=[d+p+"/dist/katex.min.js"];s.extensions&&s.extensions.includes("mhchem")&&m.push(h),m.push(x);const f=()=>{renderMathInElement(n.getSlidesElement(),c),t.layout()};(t=>{let e=document.createElement("link");e.rel="stylesheet",e.href=t,document.head.appendChild(e)})(u),async function(t){for(const e of t)await a(e)}(m).then((()=>{t.isReady()?f():t.on("ready",f.bind(this))}))}}},MathJax2:t,MathJax3:()=>{let t,e={tex:{inlineMath:[["$","$"],["\\(","\\)"]]},options:{skipHtmlTags:["script","noscript","style","textarea","pre"]},startup:{ready:()=>{MathJax.startup.defaultReady(),MathJax.startup.promise.then((()=>{Reveal.layout()}))}}};return{id:"mathjax3",init:function(a){t=a;let n=t.getConfig().mathjax3||{},i={...e,...n};i.tex={...e.tex,...n.tex},i.options={...e.options,...n.options},i.startup={...e.startup,...n.startup};let s=i.mathjax||"https://cdn.jsdelivr.net/npm/mathjax@3/es5/tex-mml-chtml.js";i.mathjax=null,window.MathJax=i,function(t,e){let a=document.createElement("script");a.type="text/javascript",a.id="MathJax-script",a.src=t,a.async=!0,a.onload=()=>{"function"==typeof e&&(e.call(),e=null)},document.head.appendChild(a)}(s,(function(){Reveal.addEventListener("slidechanged",(function(t){MathJax.typeset()}))}))}}}});export default a;
diff --git a/inst/reveal.js-4.6.1/plugin/math/math.js b/inst/reveal.js-4.6.1/plugin/math/math.js
new file mode 100644
index 0000000..0564317
--- /dev/null
+++ b/inst/reveal.js-4.6.1/plugin/math/math.js
@@ -0,0 +1 @@
+!function(t,e){"object"==typeof exports&&"undefined"!=typeof module?module.exports=e():"function"==typeof define&&define.amd?define(e):(t="undefined"!=typeof globalThis?globalThis:t||self).RevealMath=e()}(this,(function(){"use strict";const t=()=>{let t,e={messageStyle:"none",tex2jax:{inlineMath:[["$","$"],["\\(","\\)"]],skipTags:["script","noscript","style","textarea","pre"]},skipStartupTypeset:!0};return{id:"mathjax2",init:function(n){t=n;let a=t.getConfig().mathjax2||t.getConfig().math||{},i={...e,...a},s=(i.mathjax||"https://cdn.jsdelivr.net/npm/mathjax@2/MathJax.js")+"?config="+(i.config||"TeX-AMS_HTML-full");i.tex2jax={...e.tex2jax,...a.tex2jax},i.mathjax=i.config=null,function(t,e){let n=document.querySelector("head"),a=document.createElement("script");a.type="text/javascript",a.src=t;let i=()=>{"function"==typeof e&&(e.call(),e=null)};a.onload=i,a.onreadystatechange=()=>{"loaded"===this.readyState&&i()},n.appendChild(a)}(s,(function(){MathJax.Hub.Config(i),MathJax.Hub.Queue(["Typeset",MathJax.Hub,t.getRevealElement()]),MathJax.Hub.Queue(t.layout),t.on("slidechanged",(function(t){MathJax.Hub.Queue(["Typeset",MathJax.Hub,t.currentSlide])}))}))}}},e=t;return Plugin=Object.assign(e(),{KaTeX:()=>{let t,e={version:"latest",delimiters:[{left:"$$",right:"$$",display:!0},{left:"$",right:"$",display:!1},{left:"\\(",right:"\\)",display:!1},{left:"\\[",right:"\\]",display:!0}],ignoredTags:["script","noscript","style","textarea","pre"]};const n=t=>new Promise(((e,n)=>{const a=document.createElement("script");a.type="text/javascript",a.onload=e,a.onerror=n,a.src=t,document.head.append(a)}));return{id:"katex",init:function(a){t=a;let i=t.getConfig().katex||{},s={...e,...i};const{local:o,version:l,extensions:r,...c}=s;let d=s.local||"https://cdn.jsdelivr.net/npm/katex",u=s.local?"":"@"+s.version,p=d+u+"/dist/katex.min.css",h=d+u+"/dist/contrib/mhchem.min.js",x=d+u+"/dist/contrib/auto-render.min.js",m=[d+u+"/dist/katex.min.js"];s.extensions&&s.extensions.includes("mhchem")&&m.push(h),m.push(x);const f=()=>{renderMathInElement(a.getSlidesElement(),c),t.layout()};(t=>{let e=document.createElement("link");e.rel="stylesheet",e.href=t,document.head.appendChild(e)})(p),async function(t){for(const e of t)await n(e)}(m).then((()=>{t.isReady()?f():t.on("ready",f.bind(this))}))}}},MathJax2:t,MathJax3:()=>{let t,e={tex:{inlineMath:[["$","$"],["\\(","\\)"]]},options:{skipHtmlTags:["script","noscript","style","textarea","pre"]},startup:{ready:()=>{MathJax.startup.defaultReady(),MathJax.startup.promise.then((()=>{Reveal.layout()}))}}};return{id:"mathjax3",init:function(n){t=n;let a=t.getConfig().mathjax3||{},i={...e,...a};i.tex={...e.tex,...a.tex},i.options={...e.options,...a.options},i.startup={...e.startup,...a.startup};let s=i.mathjax||"https://cdn.jsdelivr.net/npm/mathjax@3/es5/tex-mml-chtml.js";i.mathjax=null,window.MathJax=i,function(t,e){let n=document.createElement("script");n.type="text/javascript",n.id="MathJax-script",n.src=t,n.async=!0,n.onload=()=>{"function"==typeof e&&(e.call(),e=null)},document.head.appendChild(n)}(s,(function(){Reveal.addEventListener("slidechanged",(function(t){MathJax.typeset()}))}))}}}})}));
diff --git a/inst/reveal.js-4.6.1/plugin/math/mathjax2.js b/inst/reveal.js-4.6.1/plugin/math/mathjax2.js
new file mode 100644
index 0000000..daebe7e
--- /dev/null
+++ b/inst/reveal.js-4.6.1/plugin/math/mathjax2.js
@@ -0,0 +1,89 @@
+/**
+ * A plugin which enables rendering of math equations inside
+ * of reveal.js slides. Essentially a thin wrapper for MathJax.
+ *
+ * @author Hakim El Hattab
+ */
+export const MathJax2 = () => {
+
+	// The reveal.js instance this plugin is attached to
+	let deck;
+
+	let defaultOptions = {
+		messageStyle: 'none',
+		tex2jax: {
+			inlineMath: [ [ '$', '$' ], [ '\\(', '\\)' ] ],
+			skipTags: [ 'script', 'noscript', 'style', 'textarea', 'pre' ]
+		},
+		skipStartupTypeset: true
+	};
+
+	function loadScript( url, callback ) {
+
+		let head = document.querySelector( 'head' );
+		let script = document.createElement( 'script' );
+		script.type = 'text/javascript';
+		script.src = url;
+
+		// Wrapper for callback to make sure it only fires once
+		let finish = () => {
+			if( typeof callback === 'function' ) {
+				callback.call();
+				callback = null;
+			}
+		}
+
+		script.onload = finish;
+
+		// IE
+		script.onreadystatechange = () => {
+			if ( this.readyState === 'loaded' ) {
+				finish();
+			}
+		}
+
+		// Normal browsers
+		head.appendChild( script );
+
+	}
+
+	return {
+		id: 'mathjax2',
+
+		init: function( reveal ) {
+
+			deck = reveal;
+
+			let revealOptions = deck.getConfig().mathjax2 || deck.getConfig().math || {};
+
+			let options = { ...defaultOptions, ...revealOptions };
+			let mathjax = options.mathjax || 'https://cdn.jsdelivr.net/npm/mathjax@2/MathJax.js';
+			let config = options.config || 'TeX-AMS_HTML-full';
+			let url = mathjax + '?config=' + config;
+
+			options.tex2jax = { ...defaultOptions.tex2jax, ...revealOptions.tex2jax };
+
+			options.mathjax = options.config = null;
+
+			loadScript( url, function() {
+
+				MathJax.Hub.Config( options );
+
+				// Typeset followed by an immediate reveal.js layout since
+				// the typesetting process could affect slide height
+				MathJax.Hub.Queue( [ 'Typeset', MathJax.Hub, deck.getRevealElement() ] );
+				MathJax.Hub.Queue( deck.layout );
+
+				// Reprocess equations in slides when they turn visible
+				deck.on( 'slidechanged', function( event ) {
+
+					MathJax.Hub.Queue( [ 'Typeset', MathJax.Hub, event.currentSlide ] );
+
+				} );
+
+			} );
+
+		}
+	}
+
+};
diff --git a/inst/reveal.js-4.6.1/plugin/math/mathjax3.js b/inst/reveal.js-4.6.1/plugin/math/mathjax3.js
new file mode 100644
index 0000000..9e62d0d
--- /dev/null
+++ b/inst/reveal.js-4.6.1/plugin/math/mathjax3.js
@@ -0,0 +1,77 @@
+/**
+ * A plugin which enables rendering of math equations inside
+ * of reveal.js slides. Essentially a thin wrapper for MathJax 3
+ *
+ * @author Hakim El Hattab
+ * @author Gerhard Burger
+ */
+export const MathJax3 = () => {
+
+    // The reveal.js instance this plugin is attached to
+    let deck;
+
+    let defaultOptions = {
+        tex: {
+            inlineMath: [ [ '$', '$' ], [ '\\(', '\\)' ]  ]
+        },
+        options: {
+            skipHtmlTags: [ 'script', 'noscript', 'style', 'textarea', 'pre' ]
+        },
+        startup: {
+            ready: () => {
+                MathJax.startup.defaultReady();
+                MathJax.startup.promise.then(() => {
+                    Reveal.layout();
+                });
+            }
+        }
+    };
+
+    function loadScript( url, callback ) {
+
+        let script = document.createElement( 'script' );
+        script.type = "text/javascript"
+        script.id = "MathJax-script"
+        script.src = url;
+        script.async = true
+
+        // Wrapper for callback to make sure it only fires once
+        script.onload = () => {
+            if (typeof callback === 'function') {
+                callback.call();
+                callback = null;
+            }
+        };
+
+        document.head.appendChild( script );
+
+    }
+
+    return {
+        id: 'mathjax3',
+        init: function(reveal) {
+
+            deck = reveal;
+
+            let revealOptions = deck.getConfig().mathjax3 || {};
+            let options = {...defaultOptions, ...revealOptions};
+            options.tex = {...defaultOptions.tex, ...revealOptions.tex}
+            options.options = {...defaultOptions.options, ...revealOptions.options}
+            options.startup = {...defaultOptions.startup, ...revealOptions.startup}
+
+            let url = options.mathjax || 'https://cdn.jsdelivr.net/npm/mathjax@3/es5/tex-mml-chtml.js';
+            options.mathjax = null;
+
+            window.MathJax = options;
+
+            loadScript( url, function() {
+                // Reprocess equations in slides when they turn visible
+                Reveal.addEventListener( 'slidechanged', function( event ) {
+                    MathJax.typeset();
+                } );
+            } );
+
+        }
+    }
+
+};
diff --git a/inst/reveal.js-4.6.1/plugin/math/plugin.js b/inst/reveal.js-4.6.1/plugin/math/plugin.js
new file mode 100644
index 0000000..a92ccfb
--- /dev/null
+++ b/inst/reveal.js-4.6.1/plugin/math/plugin.js
@@ -0,0 +1,15 @@
+import {KaTeX} from "./katex";
+import {MathJax2} from "./mathjax2";
+import {MathJax3} from "./mathjax3";
+
+const defaultTypesetter = MathJax2;
+
+/*!
+ * This plugin is a wrapper for the MathJax2,
+ * MathJax3 and KaTeX typesetter plugins.
+ */
+export default Plugin = Object.assign( defaultTypesetter(), {
+	KaTeX,
+	MathJax2,
+	MathJax3
+} );
\ No newline at end of file