upgrade to reveal.js-3.3.0
diff --git a/inst/reveal.js-3.3.0/plugin/markdown/example.html b/inst/reveal.js-3.3.0/plugin/markdown/example.html
new file mode 100644
index 0000000..36f6a51
--- /dev/null
+++ b/inst/reveal.js-3.3.0/plugin/markdown/example.html
@@ -0,0 +1,129 @@
+<!doctype html>
+<html lang="en">
+
+	<head>
+		<meta charset="utf-8">
+
+		<title>reveal.js - Markdown Demo</title>
+
+		<link rel="stylesheet" href="../../css/reveal.css">
+		<link rel="stylesheet" href="../../css/theme/white.css" id="theme">
+
+        <link rel="stylesheet" href="../../lib/css/zenburn.css">
+	</head>
+
+	<body>
+
+		<div class="reveal">
+
+			<div class="slides">
+
+                <!-- Use external markdown resource, separate slides by three newlines; vertical slides by two newlines -->
+                <section data-markdown="example.md" data-separator="^\n\n\n" data-separator-vertical="^\n\n"></section>
+
+                <!-- Slides are separated by three dashes (quick 'n dirty regular expression) -->
+                <section data-markdown data-separator="---">
+                    <script type="text/template">
+                        ## Demo 1
+                        Slide 1
+                        ---
+                        ## Demo 1
+                        Slide 2
+                        ---
+                        ## Demo 1
+                        Slide 3
+                    </script>
+                </section>
+
+                <!-- Slides are separated by newline + three dashes + newline, vertical slides identical but two dashes -->
+                <section data-markdown data-separator="^\n---\n$" data-separator-vertical="^\n--\n$">
+                    <script type="text/template">
+                        ## Demo 2
+                        Slide 1.1
+
+                        --
+
+                        ## Demo 2
+                        Slide 1.2
+
+                        ---
+
+                        ## Demo 2
+                        Slide 2
+                    </script>
+                </section>
+
+                <!-- No "extra" slides, since there are no separators defined (so they'll become horizontal rulers) -->
+                <section data-markdown>
+                    <script type="text/template">
+                        A
+
+                        ---
+
+                        B
+
+                        ---
+
+                        C
+                    </script>
+                </section>
+
+                <!-- Slide attributes -->
+                <section data-markdown>
+                    <script type="text/template">
+                        <!-- .slide: data-background="#000000" -->
+                        ## Slide attributes
+                    </script>
+                </section>
+
+                <!-- Element attributes -->
+                <section data-markdown>
+                    <script type="text/template">
+                        ## Element attributes
+                        - Item 1 <!-- .element: class="fragment" data-fragment-index="2" -->
+                        - Item 2 <!-- .element: class="fragment" data-fragment-index="1" -->
+                    </script>
+                </section>
+
+                <!-- Code -->
+                <section data-markdown>
+                    <script type="text/template">
+                        ```php
+                        public function foo()
+                        {
+                            $foo = array(
+                                'bar' => 'bar'
+                            )
+                        }
+                        ```
+                    </script>
+                </section>
+
+            </div>
+		</div>
+
+		<script src="../../lib/js/head.min.js"></script>
+		<script src="../../js/reveal.js"></script>
+
+		<script>
+
+			Reveal.initialize({
+				controls: true,
+				progress: true,
+				history: true,
+				center: true,
+
+				// Optional libraries used to extend on reveal.js
+				dependencies: [
+					{ src: '../../lib/js/classList.js', condition: function() { return !document.body.classList; } },
+					{ src: 'marked.js', condition: function() { return !!document.querySelector( '[data-markdown]' ); } },
+                    { src: 'markdown.js', condition: function() { return !!document.querySelector( '[data-markdown]' ); } },
+                    { src: '../highlight/highlight.js', async: true, callback: function() { hljs.initHighlightingOnLoad(); } },
+					{ src: '../notes/notes.js' }
+				]
+			});
+
+		</script>
+
+	</body>
+</html>
diff --git a/inst/reveal.js-3.3.0/plugin/markdown/example.md b/inst/reveal.js-3.3.0/plugin/markdown/example.md
new file mode 100644
index 0000000..6f6f577
--- /dev/null
+++ b/inst/reveal.js-3.3.0/plugin/markdown/example.md
@@ -0,0 +1,31 @@
+# Markdown Demo
+
+
+
+## External 1.1
+
+Content 1.1
+
+Note: This will only appear in the speaker notes window.
+
+
+## External 1.2
+
+Content 1.2
+
+
+
+## External 2
+
+Content 2.1
+
+
+
+## External 3.1
+
+Content 3.1
+
+
+## External 3.2
+
+Content 3.2
diff --git a/inst/reveal.js-3.3.0/plugin/markdown/markdown.js b/inst/reveal.js-3.3.0/plugin/markdown/markdown.js
new file mode 100644
index 0000000..ad596bf
--- /dev/null
+++ b/inst/reveal.js-3.3.0/plugin/markdown/markdown.js
@@ -0,0 +1,405 @@
+/**
+ * The reveal.js markdown plugin. Handles parsing of
+ * markdown inside of presentations as well as loading
+ * of external markdown documents.
+ */
+(function( root, factory ) {
+	if (typeof define === 'function' && define.amd) {
+		root.marked = require( './marked' );
+		root.RevealMarkdown = factory( root.marked );
+		root.RevealMarkdown.initialize();
+	} else if( typeof exports === 'object' ) {
+		module.exports = factory( require( './marked' ) );
+	} else {
+		// Browser globals (root is window)
+		root.RevealMarkdown = factory( root.marked );
+		root.RevealMarkdown.initialize();
+	}
+}( this, function( marked ) {
+
+	if( typeof marked === 'undefined' ) {
+		throw 'The reveal.js Markdown plugin requires marked to be loaded';
+	}
+
+	if( typeof hljs !== 'undefined' ) {
+		marked.setOptions({
+			highlight: function( lang, code ) {
+				return hljs.highlightAuto( lang, code ).value;
+			}
+		});
+	}
+
+	var DEFAULT_SLIDE_SEPARATOR = '^\r?\n---\r?\n$',
+		DEFAULT_NOTES_SEPARATOR = 'note:',
+		DEFAULT_ELEMENT_ATTRIBUTES_SEPARATOR = '\\\.element\\\s*?(.+?)$',
+		DEFAULT_SLIDE_ATTRIBUTES_SEPARATOR = '\\\.slide:\\\s*?(\\\S.+?)$';
+
+	var SCRIPT_END_PLACEHOLDER = '__SCRIPT_END__';
+
+
+	/**
+	 * Retrieves the markdown contents of a slide section
+	 * element. Normalizes leading tabs/whitespace.
+	 */
+	function getMarkdownFromSlide( section ) {
+
+		var template = section.querySelector( 'script' );
+
+		// strip leading whitespace so it isn't evaluated as code
+		var text = ( template || section ).textContent;
+
+		// restore script end tags
+		text = text.replace( new RegExp( SCRIPT_END_PLACEHOLDER, 'g' ), '</script>' );
+
+		var leadingWs = text.match( /^\n?(\s*)/ )[1].length,
+			leadingTabs = text.match( /^\n?(\t*)/ )[1].length;
+
+		if( leadingTabs > 0 ) {
+			text = text.replace( new RegExp('\\n?\\t{' + leadingTabs + '}','g'), '\n' );
+		}
+		else if( leadingWs > 1 ) {
+			text = text.replace( new RegExp('\\n? {' + leadingWs + '}', 'g'), '\n' );
+		}
+
+		return text;
+
+	}
+
+	/**
+	 * Given a markdown slide section element, this will
+	 * return all arguments that aren't related to markdown
+	 * parsing. Used to forward any other user-defined arguments
+	 * to the output markdown slide.
+	 */
+	function getForwardedAttributes( section ) {
+
+		var attributes = section.attributes;
+		var result = [];
+
+		for( var i = 0, len = attributes.length; i < len; i++ ) {
+			var name = attributes[i].name,
+				value = attributes[i].value;
+
+			// disregard attributes that are used for markdown loading/parsing
+			if( /data\-(markdown|separator|vertical|notes)/gi.test( name ) ) continue;
+
+			if( value ) {
+				result.push( name + '="' + value + '"' );
+			}
+			else {
+				result.push( name );
+			}
+		}
+
+		return result.join( ' ' );
+
+	}
+
+	/**
+	 * Inspects the given options and fills out default
+	 * values for what's not defined.
+	 */
+	function getSlidifyOptions( options ) {
+
+		options = options || {};
+		options.separator = options.separator || DEFAULT_SLIDE_SEPARATOR;
+		options.notesSeparator = options.notesSeparator || DEFAULT_NOTES_SEPARATOR;
+		options.attributes = options.attributes || '';
+
+		return options;
+
+	}
+
+	/**
+	 * Helper function for constructing a markdown slide.
+	 */
+	function createMarkdownSlide( content, options ) {
+
+		options = getSlidifyOptions( options );
+
+		var notesMatch = content.split( new RegExp( options.notesSeparator, 'mgi' ) );
+
+		if( notesMatch.length === 2 ) {
+			content = notesMatch[0] + '<aside class="notes">' + marked(notesMatch[1].trim()) + '</aside>';
+		}
+
+		// prevent script end tags in the content from interfering
+		// with parsing
+		content = content.replace( /<\/script>/g, SCRIPT_END_PLACEHOLDER );
+
+		return '<script type="text/template">' + content + '</script>';
+
+	}
+
+	/**
+	 * Parses a data string into multiple slides based
+	 * on the passed in separator arguments.
+	 */
+	function slidify( markdown, options ) {
+
+		options = getSlidifyOptions( options );
+
+		var separatorRegex = new RegExp( options.separator + ( options.verticalSeparator ? '|' + options.verticalSeparator : '' ), 'mg' ),
+			horizontalSeparatorRegex = new RegExp( options.separator );
+
+		var matches,
+			lastIndex = 0,
+			isHorizontal,
+			wasHorizontal = true,
+			content,
+			sectionStack = [];
+
+		// iterate until all blocks between separators are stacked up
+		while( matches = separatorRegex.exec( markdown ) ) {
+			notes = null;
+
+			// determine direction (horizontal by default)
+			isHorizontal = horizontalSeparatorRegex.test( matches[0] );
+
+			if( !isHorizontal && wasHorizontal ) {
+				// create vertical stack
+				sectionStack.push( [] );
+			}
+
+			// pluck slide content from markdown input
+			content = markdown.substring( lastIndex, matches.index );
+
+			if( isHorizontal && wasHorizontal ) {
+				// add to horizontal stack
+				sectionStack.push( content );
+			}
+			else {
+				// add to vertical stack
+				sectionStack[sectionStack.length-1].push( content );
+			}
+
+			lastIndex = separatorRegex.lastIndex;
+			wasHorizontal = isHorizontal;
+		}
+
+		// add the remaining slide
+		( wasHorizontal ? sectionStack : sectionStack[sectionStack.length-1] ).push( markdown.substring( lastIndex ) );
+
+		var markdownSections = '';
+
+		// flatten the hierarchical stack, and insert <section data-markdown> tags
+		for( var i = 0, len = sectionStack.length; i < len; i++ ) {
+			// vertical
+			if( sectionStack[i] instanceof Array ) {
+				markdownSections += '<section '+ options.attributes +'>';
+
+				sectionStack[i].forEach( function( child ) {
+					markdownSections += '<section data-markdown>' +  createMarkdownSlide( child, options ) + '</section>';
+				} );
+
+				markdownSections += '</section>';
+			}
+			else {
+				markdownSections += '<section '+ options.attributes +' data-markdown>' + createMarkdownSlide( sectionStack[i], options ) + '</section>';
+			}
+		}
+
+		return markdownSections;
+
+	}
+
+	/**
+	 * Parses any current data-markdown slides, splits
+	 * multi-slide markdown into separate sections and
+	 * handles loading of external markdown.
+	 */
+	function processSlides() {
+
+		var sections = document.querySelectorAll( '[data-markdown]'),
+			section;
+
+		for( var i = 0, len = sections.length; i < len; i++ ) {
+
+			section = sections[i];
+
+			if( section.getAttribute( 'data-markdown' ).length ) {
+
+				var xhr = new XMLHttpRequest(),
+					url = section.getAttribute( 'data-markdown' );
+
+				datacharset = section.getAttribute( 'data-charset' );
+
+				// see https://developer.mozilla.org/en-US/docs/Web/API/element.getAttribute#Notes
+				if( datacharset != null && datacharset != '' ) {
+					xhr.overrideMimeType( 'text/html; charset=' + datacharset );
+				}
+
+				xhr.onreadystatechange = function() {
+					if( xhr.readyState === 4 ) {
+						// file protocol yields status code 0 (useful for local debug, mobile applications etc.)
+						if ( ( xhr.status >= 200 && xhr.status < 300 ) || xhr.status === 0 ) {
+
+							section.outerHTML = slidify( xhr.responseText, {
+								separator: section.getAttribute( 'data-separator' ),
+								verticalSeparator: section.getAttribute( 'data-separator-vertical' ),
+								notesSeparator: section.getAttribute( 'data-separator-notes' ),
+								attributes: getForwardedAttributes( section )
+							});
+
+						}
+						else {
+
+							section.outerHTML = '<section data-state="alert">' +
+								'ERROR: The attempt to fetch ' + url + ' failed with HTTP status ' + xhr.status + '.' +
+								'Check your browser\'s JavaScript console for more details.' +
+								'<p>Remember that you need to serve the presentation HTML from a HTTP server.</p>' +
+								'</section>';
+
+						}
+					}
+				};
+
+				xhr.open( 'GET', url, false );
+
+				try {
+					xhr.send();
+				}
+				catch ( e ) {
+					alert( 'Failed to get the Markdown file ' + url + '. Make sure that the presentation and the file are served by a HTTP server and the file can be found there. ' + e );
+				}
+
+			}
+			else if( section.getAttribute( 'data-separator' ) || section.getAttribute( 'data-separator-vertical' ) || section.getAttribute( 'data-separator-notes' ) ) {
+
+				section.outerHTML = slidify( getMarkdownFromSlide( section ), {
+					separator: section.getAttribute( 'data-separator' ),
+					verticalSeparator: section.getAttribute( 'data-separator-vertical' ),
+					notesSeparator: section.getAttribute( 'data-separator-notes' ),
+					attributes: getForwardedAttributes( section )
+				});
+
+			}
+			else {
+				section.innerHTML = createMarkdownSlide( getMarkdownFromSlide( section ) );
+			}
+		}
+
+	}
+
+	/**
+	 * Check if a node value has the attributes pattern.
+	 * If yes, extract it and add that value as one or several attributes
+	 * the the terget element.
+	 *
+	 * You need Cache Killer on Chrome to see the effect on any FOM transformation
+	 * directly on refresh (F5)
+	 * http://stackoverflow.com/questions/5690269/disabling-chrome-cache-for-website-development/7000899#answer-11786277
+	 */
+	function addAttributeInElement( node, elementTarget, separator ) {
+
+		var mardownClassesInElementsRegex = new RegExp( separator, 'mg' );
+		var mardownClassRegex = new RegExp( "([^\"= ]+?)=\"([^\"=]+?)\"", 'mg' );
+		var nodeValue = node.nodeValue;
+		if( matches = mardownClassesInElementsRegex.exec( nodeValue ) ) {
+
+			var classes = matches[1];
+			nodeValue = nodeValue.substring( 0, matches.index ) + nodeValue.substring( mardownClassesInElementsRegex.lastIndex );
+			node.nodeValue = nodeValue;
+			while( matchesClass = mardownClassRegex.exec( classes ) ) {
+				elementTarget.setAttribute( matchesClass[1], matchesClass[2] );
+			}
+			return true;
+		}
+		return false;
+	}
+
+	/**
+	 * Add attributes to the parent element of a text node,
+	 * or the element of an attribute node.
+	 */
+	function addAttributes( section, element, previousElement, separatorElementAttributes, separatorSectionAttributes ) {
+
+		if ( element != null && element.childNodes != undefined && element.childNodes.length > 0 ) {
+			previousParentElement = element;
+			for( var i = 0; i < element.childNodes.length; i++ ) {
+				childElement = element.childNodes[i];
+				if ( i > 0 ) {
+					j = i - 1;
+					while ( j >= 0 ) {
+						aPreviousChildElement = element.childNodes[j];
+						if ( typeof aPreviousChildElement.setAttribute == 'function' && aPreviousChildElement.tagName != "BR" ) {
+							previousParentElement = aPreviousChildElement;
+							break;
+						}
+						j = j - 1;
+					}
+				}
+				parentSection = section;
+				if( childElement.nodeName ==  "section" ) {
+					parentSection = childElement ;
+					previousParentElement = childElement ;
+				}
+				if ( typeof childElement.setAttribute == 'function' || childElement.nodeType == Node.COMMENT_NODE ) {
+					addAttributes( parentSection, childElement, previousParentElement, separatorElementAttributes, separatorSectionAttributes );
+				}
+			}
+		}
+
+		if ( element.nodeType == Node.COMMENT_NODE ) {
+			if ( addAttributeInElement( element, previousElement, separatorElementAttributes ) == false ) {
+				addAttributeInElement( element, section, separatorSectionAttributes );
+			}
+		}
+	}
+
+	/**
+	 * Converts any current data-markdown slides in the
+	 * DOM to HTML.
+	 */
+	function convertSlides() {
+
+		var sections = document.querySelectorAll( '[data-markdown]');
+
+		for( var i = 0, len = sections.length; i < len; i++ ) {
+
+			var section = sections[i];
+
+			// Only parse the same slide once
+			if( !section.getAttribute( 'data-markdown-parsed' ) ) {
+
+				section.setAttribute( 'data-markdown-parsed', true )
+
+				var notes = section.querySelector( 'aside.notes' );
+				var markdown = getMarkdownFromSlide( section );
+
+				section.innerHTML = marked( markdown );
+				addAttributes( 	section, section, null, section.getAttribute( 'data-element-attributes' ) ||
+								section.parentNode.getAttribute( 'data-element-attributes' ) ||
+								DEFAULT_ELEMENT_ATTRIBUTES_SEPARATOR,
+								section.getAttribute( 'data-attributes' ) ||
+								section.parentNode.getAttribute( 'data-attributes' ) ||
+								DEFAULT_SLIDE_ATTRIBUTES_SEPARATOR);
+
+				// If there were notes, we need to re-add them after
+				// having overwritten the section's HTML
+				if( notes ) {
+					section.appendChild( notes );
+				}
+
+			}
+
+		}
+
+	}
+
+	// API
+	return {
+
+		initialize: function() {
+			processSlides();
+			convertSlides();
+		},
+
+		// TODO: Do these belong in the API?
+		processSlides: processSlides,
+		convertSlides: convertSlides,
+		slidify: slidify
+
+	};
+
+}));
diff --git a/inst/reveal.js-3.3.0/plugin/markdown/marked.js b/inst/reveal.js-3.3.0/plugin/markdown/marked.js
new file mode 100644
index 0000000..70af29b
--- /dev/null
+++ b/inst/reveal.js-3.3.0/plugin/markdown/marked.js
@@ -0,0 +1,6 @@
+/**
+ * marked - a markdown parser
+ * Copyright (c) 2011-2014, Christopher Jeffrey. (MIT Licensed)
+ * https://github.com/chjj/marked
+ */
+(function(){function e(e){this.tokens=[],this.tokens.links={},this.options=e||a.defaults,this.rules=p.normal,this.options.gfm&&(this.rules=this.options.tables?p.tables:p.gfm)}function t(e,t){if(this.options=t||a.defaults,this.links=e,this.rules=u.normal,this.renderer=this.options.renderer||new n,this.renderer.options=this.options,!this.links)throw new Error("Tokens array requires a `links` property.");this.options.gfm?this.rules=this.options.breaks?u.breaks:u.gfm:this.options.pedantic&&(this.rules=u.pedantic)}function n(e){this.options=e||{}}function r(e){this.tokens=[],this.token=null,this.options=e||a.defaults,this.options.renderer=this.options.renderer||new n,this.renderer=this.options.renderer,this.renderer.options=this.options}function s(e,t){return e.replace(t?/&/g:/&(?!#?\w+;)/g,"&amp;").replace(/</g,"&lt;").replace(/>/g,"&gt;").replace(/"/g,"&quot;").replace(/'/g,"&#39;")}function i(e){return e.replace(/&([#\w]+);/g,function(e,t){return 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try{return n&&(n=h({},a.defaults,n)),r.parse(e.lex(t,n),n)}catch(c){if(c.message+="\nPlease report this to https://github.com/chjj/marked.",(n||a.defaults).silent)return"<p>An error occured:</p><pre>"+s(c.message+"",!0)+"</pre>";throw c}}var p={newline:/^\n+/,code:/^( {4}[^\n]+\n*)+/,fences:o,hr:/^( *[-*_]){3,} *(?:\n+|$)/,heading:/^ *(#{1,6}) *([^\n]+?) *#* *(?:\n+|$)/,nptable:o,lheading:/^([^\n]+)\n *(=|-){2,} *(?:\n+|$)/,blockquote:/^( *>[^\n]+(\n(?!def)[^\n]+)*\n*)+/,list:/^( *)(bull) [\s\S]+?(?:hr|def|\n{2,}(?! )(?!\1bull )\n*|\s*$)/,html:/^ *(?:comment *(?:\n|\s*$)|closed *(?:\n{2,}|\s*$)|closing *(?:\n{2,}|\s*$))/,def:/^ *\[([^\]]+)\]: *<?([^\s>]+)>?(?: +["(]([^\n]+)[")])? *(?:\n+|$)/,table:o,paragraph:/^((?:[^\n]+\n?(?!hr|heading|lheading|blockquote|tag|def))+)\n*/,text:/^[^\n]+/};p.bullet=/(?:[*+-]|\d+\.)/,p.item=/^( *)(bull) [^\n]*(?:\n(?!\1bull )[^\n]*)*/,p.item=l(p.item,"gm")(/bull/g,p.bullet)(),p.list=l(p.list)(/bull/g,p.bullet)("hr","\\n+(?=\\1?(?:[-*_] 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