Formatted sourcecode

Change-Id: I997e365aafdab24724a55ec45cb99fab165bfc84
diff --git a/Changes b/Changes
index a681cc0..93a2045 100644
--- a/Changes
+++ b/Changes
@@ -1,6 +1,6 @@
-0.55.3 2016-02-15
+0.55.3 2016-02-19
 	- [bugfix] Use base foundry for default sentences and paragraphs
-	  (diewald)
+	  (diewald, margaretha)
 	- [bugfix] Distance constraint exclusion serialized (diewald)
 
 0.55.2 2016-02-13
diff --git a/src/main/java/de/ids_mannheim/korap/KrillIndex.java b/src/main/java/de/ids_mannheim/korap/KrillIndex.java
index b2b1fce..9fb32a4 100644
--- a/src/main/java/de/ids_mannheim/korap/KrillIndex.java
+++ b/src/main/java/de/ids_mannheim/korap/KrillIndex.java
@@ -968,7 +968,8 @@
             for (LeafReaderContext atomic : this.reader().leaves()) {
 
                 // Retrieve the single document of interest
-                DocIdSet filterSet = filter.getDocIdSet(atomic, atomic.reader().getLiveDocs());
+                DocIdSet filterSet = filter.getDocIdSet(atomic, atomic.reader()
+                        .getLiveDocs());
 
 
                 // Create a bitset for the correct document
@@ -977,7 +978,8 @@
                 DocIdSetIterator filterIterator = filterSet.iterator();
 
                 if (DEBUG)
-                    log.trace("Checking document in {} with {}", filterSet, bitset);
+                    log.trace("Checking document in {} with {}", filterSet,
+                            bitset);
 
                 // No document found
                 if (filterIterator == null)
diff --git a/src/main/java/de/ids_mannheim/korap/KrillQuery.java b/src/main/java/de/ids_mannheim/korap/KrillQuery.java
index 86c6922..b55cd43 100644
--- a/src/main/java/de/ids_mannheim/korap/KrillQuery.java
+++ b/src/main/java/de/ids_mannheim/korap/KrillQuery.java
@@ -1147,7 +1147,7 @@
 
             // Ignore foundry for orth layer
             if (layer.equals(".")) {
-                layer = "s"; 
+                layer = "s";
                 value.setLength(0);
             }
             else if (layer.equals("i")) {
diff --git a/src/main/java/de/ids_mannheim/korap/index/TermInfo.java b/src/main/java/de/ids_mannheim/korap/index/TermInfo.java
index c76f053..dc7403a 100644
--- a/src/main/java/de/ids_mannheim/korap/index/TermInfo.java
+++ b/src/main/java/de/ids_mannheim/korap/index/TermInfo.java
@@ -42,6 +42,7 @@
         this.payload = payload;
     };
 
+
     public TermInfo analyze () {
         if (analyzed)
             return this;
@@ -78,19 +79,19 @@
                 ttype = 3;
                 break;
 
-        case '_':
-            // pos
-            this.type = "pos";
-            ttype = 1;
-            tterm = tterm.substring(1);
-            break;
+            case '_':
+                // pos
+                this.type = "pos";
+                ttype = 1;
+                tterm = tterm.substring(1);
+                break;
 
-        case '@':
-            // pos
-            this.type = "attr";
-            ttype = 4;
-            tterm = tterm.substring(1);
-            break;
+            case '@':
+                // pos
+                this.type = "attr";
+                ttype = 4;
+                tterm = tterm.substring(1);
+                break;
 
             default:
                 // term
diff --git a/src/main/java/de/ids_mannheim/korap/response/match/MatchIdentifier.java b/src/main/java/de/ids_mannheim/korap/response/match/MatchIdentifier.java
index 8af5e36..b41cd2e 100644
--- a/src/main/java/de/ids_mannheim/korap/response/match/MatchIdentifier.java
+++ b/src/main/java/de/ids_mannheim/korap/response/match/MatchIdentifier.java
@@ -10,10 +10,8 @@
 
     // TODO: "contains" is necessary for a compatibility bug in Kustvakt
     Pattern idRegex = Pattern.compile("^(?:match-|contains-)"
-                                      + "(?:([^!]+?)[!\\.])?" +
-                                      "([^!]+)-p([0-9]+)-([0-9]+)" +
-                                      "((?:\\(-?[0-9]+\\)-?[0-9]+--?[0-9]+)*)" +
-                                      "(?:c.+?)?$");
+            + "(?:([^!]+?)[!\\.])?" + "([^!]+)-p([0-9]+)-([0-9]+)"
+            + "((?:\\(-?[0-9]+\\)-?[0-9]+--?[0-9]+)*)" + "(?:c.+?)?$");
     Pattern posRegex = Pattern.compile("\\(([0-9]+)\\)([0-9]+)-([0-9]+)");
 
 
diff --git a/src/test/java/de/ids_mannheim/korap/collection/TestKrillCollectionJSON.java b/src/test/java/de/ids_mannheim/korap/collection/TestKrillCollectionJSON.java
index 546efc9..9232711 100644
--- a/src/test/java/de/ids_mannheim/korap/collection/TestKrillCollectionJSON.java
+++ b/src/test/java/de/ids_mannheim/korap/collection/TestKrillCollectionJSON.java
@@ -112,7 +112,8 @@
         assertFalse(ks.hasErrors());
         assertFalse(ks.hasWarnings());
         assertFalse(ks.hasMessages());
-        assertEquals("QueryWrapperFilter(author:/Goe:th=e/)", ks.getCollection().toString());
+        assertEquals("QueryWrapperFilter(author:/Goe:th=e/)", ks
+                .getCollection().toString());
     };
 
 
diff --git a/src/test/java/de/ids_mannheim/korap/index/TestMatchIdentifier.java b/src/test/java/de/ids_mannheim/korap/index/TestMatchIdentifier.java
index ec38716..ae08cc4 100644
--- a/src/test/java/de/ids_mannheim/korap/index/TestMatchIdentifier.java
+++ b/src/test/java/de/ids_mannheim/korap/index/TestMatchIdentifier.java
@@ -28,6 +28,7 @@
 
     ObjectMapper mapper = new ObjectMapper();
 
+
     @Test
     public void identifierExample1 () throws IOException, QueryException {
         MatchIdentifier id = new MatchIdentifier("match-c1!d1-p4-20");
@@ -549,16 +550,16 @@
 
 
     @Test
-    public void indexFailingMatchID () throws IOException,
-            QueryException {
+    public void indexFailingMatchID () throws IOException, QueryException {
         KrillIndex ki = new KrillIndex();
-        Match km = ki.getMatchInfo("match-PRO-DUD!PRO-DUD_KSTA-2013-01.7483-2013-01",
-                                   "tokens", "*", "m",
-                                   false, false);
+        Match km = ki.getMatchInfo(
+                "match-PRO-DUD!PRO-DUD_KSTA-2013-01.7483-2013-01", "tokens",
+                "*", "m", false, false);
         JsonNode res = mapper.readTree(km.toJsonString());
         assertEquals("730", res.at("/errors/0/0").asText());
     };
 
+
     @Test
     public void indexExampleNullInfo () throws IOException, QueryException {
         KrillIndex ki = new KrillIndex();
@@ -585,49 +586,36 @@
         KrillIndex ki = new KrillIndex();
         ki.addDoc(createAttributeFieldDoc());
         ki.commit();
-        Match km = ki.getMatchInfo("match-ca1!da1-p7-10",
-                                   "tokens",
-                                   null,
-                                   null,
-                                   false,
-                                   false);
+        Match km = ki.getMatchInfo("match-ca1!da1-p7-10", "tokens", null, null,
+                false, false);
         JsonNode res = mapper.readTree(km.toJsonString());
         assertEquals("tokens", res.at("/field").asText());
         assertTrue(res.at("/startMore").asBoolean());
         assertTrue(res.at("/endMore").asBoolean());
         assertEquals("ca1", res.at("/corpusID").asText());
         assertEquals("da1", res.at("/docID").asText());
-        assertEquals("<span class=\"context-left\">"+
-                     "<span class=\"more\">"+
-                     "</span>"+
-                     "</span>"+
-                     "<mark>"+
-                     //                     "<span title=\"@:x/s:key:value\">"+
-                     "<span title=\"f/m:acht\">"+
-                     "<span title=\"f/y:eight\">"+
-                     "<span title=\"it/is:8\">"+
-                     "<span title=\"x/o:achtens\">b</span>"+
-                     //                     "</span>"+
-                     "</span>"+
-                     "</span>"+
-                     "</span>"+
-                     "<span title=\"f/m:neun\">"+
-                     "<span title=\"f/y:nine\">"+
-                     "<span title=\"it/is:9\">"+
-                     "<span title=\"x/o:neuntens\">a</span>"+
-                     "</span>"+
-                     "</span>"+
-                     "</span>"+
-                     "<span title=\"f/m:zehn\">"+
-                     "<span title=\"f/y:ten\">"+
-                     "<span title=\"it/is:10\">"+
-                     "<span title=\"x/o:zehntens\">c</span>"+
-                     "</span>"+
-                     "</span>"+
-                     "</span>"+
-                     "</mark>"+
-                     "<span class=\"context-right\">"+
-                     "</span>", res.at("/snippet").asText());
+        assertEquals("<span class=\"context-left\">"
+                + "<span class=\"more\">"
+                + "</span>"
+                + "</span>"
+                + "<mark>"
+                +
+                //                     "<span title=\"@:x/s:key:value\">"+
+                "<span title=\"f/m:acht\">"
+                + "<span title=\"f/y:eight\">"
+                + "<span title=\"it/is:8\">"
+                + "<span title=\"x/o:achtens\">b</span>"
+                +
+                //                     "</span>"+
+                "</span>" + "</span>" + "</span>" + "<span title=\"f/m:neun\">"
+                + "<span title=\"f/y:nine\">" + "<span title=\"it/is:9\">"
+                + "<span title=\"x/o:neuntens\">a</span>" + "</span>"
+                + "</span>" + "</span>" + "<span title=\"f/m:zehn\">"
+                + "<span title=\"f/y:ten\">" + "<span title=\"it/is:10\">"
+                + "<span title=\"x/o:zehntens\">c</span>" + "</span>"
+                + "</span>" + "</span>" + "</mark>"
+                + "<span class=\"context-right\">" + "</span>",
+                res.at("/snippet").asText());
     };
 
 
@@ -714,6 +702,7 @@
         return fd;
     };
 
+
     /*
       Check for terms|spans|rels ...
      */
diff --git a/src/test/java/de/ids_mannheim/korap/index/TestReferenceIndex.java b/src/test/java/de/ids_mannheim/korap/index/TestReferenceIndex.java
index d46d930..a9d5534 100644
--- a/src/test/java/de/ids_mannheim/korap/index/TestReferenceIndex.java
+++ b/src/test/java/de/ids_mannheim/korap/index/TestReferenceIndex.java
@@ -102,13 +102,13 @@
         // cat="vb" & cat="prp" & cat="nn" & #1 .notordered #2 & #1
         // .{0,2} #3 & #3 -> #2
 
-		assertEquals(
-				"spanReference(focus(#[1,2]spanSegment(focus(#2: "
-						+ "spanSegment(spanRelation(tokens:>:stanford/d:tag), "
-						+ "focus(3: spanDistance(focus(1: spanDistance({1: <tokens:vb />}, "
-						+ "{2: <tokens:prp />}, [(w[1:2], notOrdered, notExcluded)])), "
-						+ "{3: <tokens:nn />}, [(w[1:3], notOrdered, notExcluded)])))), "
-						+ "{2: <tokens:prp />})), 2)", sq.toString());
+        assertEquals(
+                "spanReference(focus(#[1,2]spanSegment(focus(#2: "
+                        + "spanSegment(spanRelation(tokens:>:stanford/d:tag), "
+                        + "focus(3: spanDistance(focus(1: spanDistance({1: <tokens:vb />}, "
+                        + "{2: <tokens:prp />}, [(w[1:2], notOrdered, notExcluded)])), "
+                        + "{3: <tokens:nn />}, [(w[1:3], notOrdered, notExcluded)])))), "
+                        + "{2: <tokens:prp />})), 2)", sq.toString());
 
         SpanElementQuery seq1 = new SpanElementQuery("tokens", "vb");
         // new SpanTermQuery(new Term("tokens", "c:vb"));
@@ -121,11 +121,11 @@
         SpanClassQuery scq3 = new SpanClassQuery(seq3, (byte) 3);
 
         SpanDistanceQuery sdq1 = new SpanDistanceQuery(scq1, scq2,
-				new DistanceConstraint(1, 2, false, false), true);
+                new DistanceConstraint(1, 2, false, false), true);
         SpanFocusQuery sfq1 = new SpanFocusQuery(sdq1, (byte) 1);
 
         SpanDistanceQuery sdq2 = new SpanDistanceQuery(sfq1, scq3,
-				new DistanceConstraint(1, 3, false, false), true);
+                new DistanceConstraint(1, 3, false, false), true);
         SpanFocusQuery sfq2 = new SpanFocusQuery(sdq2, (byte) 3);
 
         // nn -> prp
@@ -198,7 +198,7 @@
                 "spanReference(focus(#[1,2]spanSegment(focus(#2: spanSegment(spanRelation(tokens:>:stanford/d:tag), "
                         + "focus(1: spanReference(focus(#[1,2]spanSegment(focus(#2: spanSegment(spanRelation(tokens:>:stanford/d:tag), "
                         + "focus(3: spanDistance(focus(1: spanDistance({1: <tokens:vb />}, {2: <tokens:prp />}, "
-						+ "[(w[1:2], notOrdered, notExcluded)])), {3: <tokens:nn />}, [(w[1:3], notOrdered, notExcluded)])))), "
+                        + "[(w[1:2], notOrdered, notExcluded)])), {3: <tokens:nn />}, [(w[1:3], notOrdered, notExcluded)])))), "
                         + "{2: <tokens:prp />})), 2)))), {3: <tokens:nn />})), 3)",
                 sq.toString());
         kr = ki.search(sq, (short) 10);
diff --git a/src/test/java/de/ids_mannheim/korap/query/TestSpanReferenceQueryJSON.java b/src/test/java/de/ids_mannheim/korap/query/TestSpanReferenceQueryJSON.java
index e77cfcc..a5a65b4 100644
--- a/src/test/java/de/ids_mannheim/korap/query/TestSpanReferenceQueryJSON.java
+++ b/src/test/java/de/ids_mannheim/korap/query/TestSpanReferenceQueryJSON.java
@@ -65,6 +65,7 @@
                         + "{1: <tokens:c:VP />})), 1)", sq.toString());
     }
 
+
     @Test
     public void testDistanceReferences () throws QueryException {
 
diff --git a/src/test/java/de/ids_mannheim/korap/query/TestSpanSequenceQueryJSON.java b/src/test/java/de/ids_mannheim/korap/query/TestSpanSequenceQueryJSON.java
index f1306b9..8762e4f 100644
--- a/src/test/java/de/ids_mannheim/korap/query/TestSpanSequenceQueryJSON.java
+++ b/src/test/java/de/ids_mannheim/korap/query/TestSpanSequenceQueryJSON.java
@@ -311,18 +311,24 @@
                 sqwi.toQuery().toString());
     };
 
+
     @Test
     public void queryJSONseqSentenceDistance () throws QueryException {
         SpanQueryWrapper sqwi = jsonQueryFile("distance-sentence.jsonld");
 
-        assertEquals("spanElementDistance({129: tokens:s:der}, {129: tokens:s:Baum}, [(base/s:s[0:0], notOrdered, notExcluded)])",sqwi.toQuery().toString());
+        assertEquals(
+                "spanElementDistance({129: tokens:s:der}, {129: tokens:s:Baum}, [(base/s:s[0:0], notOrdered, notExcluded)])",
+                sqwi.toQuery().toString());
     };
 
+
     @Test
     public void queryJSONseqSentenceDistanceExcluded () throws QueryException {
         SpanQueryWrapper sqwi = jsonQueryFile("distance-sentence-excluded.jsonld");
 
-        assertEquals("spanElementDistance({129: tokens:s:der}, {129: tokens:s:Baum}, [(base/s:s[0:0], notOrdered, excluded)])",sqwi.toQuery().toString());
+        assertEquals(
+                "spanElementDistance({129: tokens:s:der}, {129: tokens:s:Baum}, [(base/s:s[0:0], notOrdered, excluded)])",
+                sqwi.toQuery().toString());
     };
 
 
@@ -330,7 +336,9 @@
     public void queryJSONkoralSimpleDistanceBug () throws QueryException {
         SpanQueryWrapper sqwi = jsonQueryFile("distance-simple.jsonld");
 
-        assertEquals("spanDistance(tokens:s:der, tokens:s:Baum, [(w[2:2], ordered, notExcluded)])",sqwi.toQuery().toString());
+        assertEquals(
+                "spanDistance(tokens:s:der, tokens:s:Baum, [(w[2:2], ordered, notExcluded)])",
+                sqwi.toQuery().toString());
     };
 
 
diff --git a/src/test/java/de/ids_mannheim/korap/response/TestMatch.java b/src/test/java/de/ids_mannheim/korap/response/TestMatch.java
index 182300a..81cd3c3 100644
--- a/src/test/java/de/ids_mannheim/korap/response/TestMatch.java
+++ b/src/test/java/de/ids_mannheim/korap/response/TestMatch.java
@@ -17,21 +17,26 @@
         assertEquals(null, m.getID());
     };
 
+
     @Test
     public void testMatchBug () {
-        Match m = new Match("match-PRO-DUD!PRO-DUD_KSTA-2013-01.7483-2013-01", false);
+        Match m = new Match("match-PRO-DUD!PRO-DUD_KSTA-2013-01.7483-2013-01",
+                false);
         assertEquals(null, m.getID());
     };
 
+
     @Test
     public void testMatchTextSigle1 () {
         Match m = new Match("match-GOE!GOE_AGK.00000-p60348-60349", false);
         assertEquals("GOE_AGK.00000", m.getTextSigle());
     };
 
+
     @Test
     public void testMatchTextSigle2 () {
-        Match m = new Match("match-PRO-DUD!PRO-DUD_KSTA-2013-01.3651-p326-327", false);
+        Match m = new Match("match-PRO-DUD!PRO-DUD_KSTA-2013-01.3651-p326-327",
+                false);
         assertEquals("PRO-DUD_KSTA-2013-01.3651", m.getTextSigle());
     };
 };
diff --git a/src/test/java/de/ids_mannheim/korap/search/TestKrill.java b/src/test/java/de/ids_mannheim/korap/search/TestKrill.java
index 2ea0760..dfca5fc 100644
--- a/src/test/java/de/ids_mannheim/korap/search/TestKrill.java
+++ b/src/test/java/de/ids_mannheim/korap/search/TestKrill.java
@@ -839,7 +839,8 @@
         assertEquals(kr.getMatch(3).getSnippetBrackets(),
                 "Saragat-Partei zerfällt Rom ([ADN]) "
                         + "die von dem Rechtssozialisten Saragat geführte ...");
-        assertEquals(kr.getMatch(23).getSnippetBrackets(),
+        assertEquals(
+                kr.getMatch(23).getSnippetBrackets(),
                 "... dem Namen \"Einheitsbewegung der sozialistischen "
                         + "Initiative\" [eine neue politische Gruppierung] "
                         + "ins Leben gerufen hatten. Pressemeldungen zufolge ...");
@@ -974,7 +975,8 @@
         assertEquals(0, kr.getStartIndex());
         assertEquals(25, kr.getItemsPerPage());
 
-        assertFalse(kr.getContext().toJsonNode().toString().equals("\"base/s:s\""));
+        assertFalse(kr.getContext().toJsonNode().toString()
+                .equals("\"base/s:s\""));
 
         json = getString(getClass().getResource(
                 "/queries/bsp-context-sentence.jsonld").getFile());
@@ -1092,21 +1094,23 @@
         assertEquals(kr.getTotalResults(), 1);
     };
 
+
     /**
-     * This is a Schreibgebrauch ressource that didn't work for element queries.
+     * This is a Schreibgebrauch ressource that didn't work for
+     * element queries.
      */
     @Test
     public void searchSchreibgebrauchData () throws IOException {
         // Construct index
         KrillIndex ki = new KrillIndex();
         // Indexing test files
-        ki.addDoc(getClass().getResourceAsStream("/sgbr/BSP-2013-01-32.json.gz"), true);
+        ki.addDoc(getClass()
+                .getResourceAsStream("/sgbr/BSP-2013-01-32.json.gz"), true);
         ki.commit();
 
         Krill k = new Krill(new QueryBuilder("tokens").tag("base/s:s"));
 
-        assertEquals(k.getSpanQuery().toString(),
-                "<tokens:base/s:s />");
+        assertEquals(k.getSpanQuery().toString(), "<tokens:base/s:s />");
 
         Result kr = k.apply(ki);
         assertEquals(kr.getTotalResults(), 1);