Integrated lite and full services and controllers in core.

Change-Id: I34914c89c2266fa02bee1a5b0522c46139b13966
diff --git a/lite/src/main/resources/db/V1__annotation_tables.sql b/lite/src/main/resources/db/V1__annotation_tables.sql
new file mode 100644
index 0000000..b0299d1
--- /dev/null
+++ b/lite/src/main/resources/db/V1__annotation_tables.sql
@@ -0,0 +1,53 @@
+CREATE TABLE IF NOT EXISTS annotation(
+	id INTEGER PRIMARY KEY AUTOINCREMENT,
+	code VARCHAR(20) NOT NULL,
+	type VARCHAR(20) NOT NULL,
+	text VARCHAR(20) NULL,
+	description VARCHAR(100) NOT NULL,
+	de_description VARCHAR(100)
+);
+
+CREATE UNIQUE INDEX annotation_index ON annotation (code, type);
+
+CREATE TABLE IF NOT EXISTS annotation_layer(
+	id INTEGER PRIMARY KEY AUTOINCREMENT,
+	foundry_id INTEGER NOT NULL,
+	layer_id INTEGER NOT NULL,
+	description VARCHAR(255) NOT NULL,
+	FOREIGN KEY (foundry_id)
+		REFERENCES annotation (id)
+		ON DELETE CASCADE,
+	FOREIGN KEY (layer_id)
+		REFERENCES annotation (id)
+		ON DELETE CASCADE
+);
+
+CREATE UNIQUE INDEX annotation_layer_index ON annotation_layer (foundry_id, layer_id);
+
+CREATE TABLE IF NOT EXISTS annotation_key(
+	id INTEGER PRIMARY KEY AUTOINCREMENT,
+	layer_id INTEGER NOT NULL,
+	key_id INTEGER NOT NULL,
+	FOREIGN KEY (layer_id)
+		REFERENCES annotation_layer (id)
+		ON DELETE CASCADE,
+	FOREIGN KEY (key_id)
+		REFERENCES annotation (id)
+		ON DELETE CASCADE
+);
+
+CREATE UNIQUE INDEX annotation_key_index ON annotation_key (layer_id, key_id);
+
+CREATE TABLE IF NOT EXISTS annotation_value(
+	id INTEGER PRIMARY KEY AUTOINCREMENT,
+	key_id INTEGER NOT NULL,
+	value_id INTEGER NOT NULL,
+	FOREIGN KEY (key_id)
+		REFERENCES annotation_key (id)
+		ON DELETE CASCADE,
+	FOREIGN KEY (key_id)
+		REFERENCES annotation (id)
+		ON DELETE CASCADE
+);
+
+CREATE UNIQUE INDEX annotation_value_index ON annotation_value (key_id, value_id);
diff --git a/lite/src/main/resources/hibernate.properties b/lite/src/main/resources/hibernate.properties
new file mode 100644
index 0000000..199dc73
--- /dev/null
+++ b/lite/src/main/resources/hibernate.properties
@@ -0,0 +1,8 @@
+hibernate.dialect=org.hibernate.dialect.MySQLDialect
+hibernate.hbm2ddl.auto=none
+hibernate.show_sql=false
+hibernate.cache.use_query_cache=false
+hibernate.cache.use_second_level_cache=false
+hibernate.cache.provider=org.hibernate.cache.EhCacheProvider
+hibernate.cache.region.factory=org.hibernate.cache.ehcache.EhCacheRegionFactory
+hibernate.jdbc.time_zone=UTC
\ No newline at end of file
diff --git a/lite/src/main/resources/kustvakt-lite.conf b/lite/src/main/resources/kustvakt-lite.conf
index f0dd6b3..db385f0 100644
--- a/lite/src/main/resources/kustvakt-lite.conf
+++ b/lite/src/main/resources/kustvakt-lite.conf
@@ -8,7 +8,6 @@
 
 krill.namedVC=vc
 
-
 # Kustvakt
 
 current.api.version = v1.0
diff --git a/lite/src/main/resources/kustvakt.info b/lite/src/main/resources/kustvakt.info
new file mode 100644
index 0000000..ea847bb
--- /dev/null
+++ b/lite/src/main/resources/kustvakt.info
@@ -0,0 +1,8 @@
+kustvakt.version=${project.version}
+kustvakt.name=${project.name}
+
+# use this file to define the properties and logging file names
+kustvakt.properties=./kustvakt-lite.conf
+kustvakt.logging=./log4j.properties
+kustvakt.cache=true
+kustvakt.cache_store=./store
\ No newline at end of file
diff --git a/lite/src/main/resources/lite-config.xml b/lite/src/main/resources/lite-config.xml
index 671ca33..7c5991c 100644
--- a/lite/src/main/resources/lite-config.xml
+++ b/lite/src/main/resources/lite-config.xml
@@ -1,57 +1,181 @@
 <?xml version="1.0" encoding="UTF-8"?>
-<beans xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
-       xmlns:util="http://www.springframework.org/schema/util"
-       xmlns:context="http://www.springframework.org/schema/context"
-       xmlns="http://www.springframework.org/schema/beans"
-       xsi:schemaLocation="http://www.springframework.org/schema/beans
+<beans xmlns="http://www.springframework.org/schema/beans"
+	xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns:util="http://www.springframework.org/schema/util"
+	xmlns:context="http://www.springframework.org/schema/context" xmlns:tx="http://www.springframework.org/schema/tx"
+	xsi:schemaLocation="http://www.springframework.org/schema/beans
            http://www.springframework.org/schema/beans/spring-beans.xsd
+           http://www.springframework.org/schema/tx
+           http://www.springframework.org/schema/tx/spring-tx.xsd
            http://www.springframework.org/schema/context
            http://www.springframework.org/schema/context/spring-context.xsd
            http://www.springframework.org/schema/util
            http://www.springframework.org/schema/util/spring-util.xsd">
 
 
-    <context:component-scan base-package="de.ids_mannheim.korap" />
+	<context:component-scan
+		base-package="de.ids_mannheim.korap.web.filter, de.ids_mannheim.korap.web.utils,
+		de.ids_mannheim.korap.authentication.http" />
 	<context:annotation-config />
 
-    <bean id="properties"
-          class="org.springframework.beans.factory.config.PropertiesFactoryBean">
-        <property name="ignoreResourceNotFound" value="true"/>
-        <property name="locations">
-            <array>
-                <value>classpath:kustvakt-lite.conf</value>
-                <value>file:./kustvakt-lite.conf</value>
-            </array>
-        </property>
-    </bean>
-    
-    <bean class="org.springframework.beans.factory.config.PropertyPlaceholderConfigurer">
-		<property name="properties">
-			<ref bean="properties"/>
+	<bean id="placeholders"
+		class="org.springframework.context.support.PropertySourcesPlaceholderConfigurer">
+		<property name="ignoreResourceNotFound" value="true" />
+		<property name="locations">
+			<array>
+				<value>classpath:lite-jdbc.properties</value>
+				<value>file:./lite-jdbc.properties</value>
+				<value>classpath:hibernate.properties</value>
+				<value>classpath:kustvakt-lite.conf</value>
+				<value>file:./kustvakt-lite.conf</value>
+			</array>
 		</property>
 	</bean>
 
-    <bean id="kustvakt_auditing"
-          class="de.ids_mannheim.korap.interfaces.defaults.DefaultAuditing">
-    </bean>
-    
-    <bean id="kustvakt_response"
-          class="de.ids_mannheim.korap.web.CoreResponseHandler">
-          <constructor-arg index="0" name="iface" ref="kustvakt_auditing"/>
-    </bean>
-
-    <bean id="kustvakt_config"
-          class="de.ids_mannheim.korap.config.KustvaktConfiguration">
-        <constructor-arg index="0" name="properties" ref="properties"/>
-    </bean>
-
-    <bean id="kustvakt_rewrite" class="de.ids_mannheim.korap.resource.rewrite.RewriteHandler">
-		<constructor-arg ref="kustvakt_config" />
+	<bean id="properties"
+		class="org.springframework.beans.factory.config.PropertiesFactoryBean">
+		<property name="ignoreResourceNotFound" value="true" />
+		<property name="locations">
+			<array>
+				<value>classpath:kustvakt-lite.conf</value>
+				<value>file:./kustvakt-lite.conf</value>
+			</array>
+		</property>
 	</bean>
-    
-    <bean id="search_krill"
-          class="de.ids_mannheim.korap.web.SearchKrill">
-        <constructor-arg value="${krill.indexDir}"/>
-    </bean>
-    
+
+	<bean id="config" class="de.ids_mannheim.korap.config.KustvaktConfiguration">
+		<constructor-arg index="0" name="properties" ref="properties" />
+	</bean>
+
+	<!-- Database -->
+
+	<bean id="sqliteDataSource"
+		class="org.springframework.jdbc.datasource.SingleConnectionDataSource"
+		lazy-init="true">
+		<property name="driverClassName" value="${jdbc.driverClassName}" />
+		<property name="url" value="${jdbc.url}" />
+		<property name="username" value="${jdbc.username}" />
+		<property name="password" value="${jdbc.password}" />
+		<property name="connectionProperties">
+			<props>
+				<prop key="date_string_format">yyyy-MM-dd HH:mm:ss</prop>
+			</props>
+		</property>
+
+		<!-- relevant for single connection datasource and sqlite -->
+		<property name="suppressClose">
+			<value>true</value>
+		</property>
+		<!--<property name="initialSize" value="2"/> -->
+		<!--<property name="poolPreparedStatements" value="true"/> -->
+	</bean>
+
+	<bean id="flyway" class="org.flywaydb.core.Flyway" init-method="migrate">
+		<property name="baselineOnMigrate" value="true" />
+		<!-- <property name="validateOnMigrate" value="false" /> -->
+		<!-- <property name="cleanOnValidationError" value="true" /> -->
+		<property name="locations" value="${jdbc.schemaPath}" />
+		<property name="dataSource" ref="sqliteDataSource" />
+	</bean>
+
+	<bean id="entityManagerFactory"
+		class="org.springframework.orm.jpa.LocalContainerEntityManagerFactoryBean">
+		<property name="dataSource" ref="sqliteDataSource" />
+
+		<property name="packagesToScan">
+			<array>
+				<value>de.ids_mannheim.korap.entity</value>
+			</array>
+		</property>
+		<property name="jpaVendorAdapter">
+			<bean id="jpaVendorAdapter"
+				class="org.springframework.orm.jpa.vendor.HibernateJpaVendorAdapter">
+				<property name="databasePlatform" value="${hibernate.dialect}" />
+			</bean>
+		</property>
+		<property name="jpaProperties">
+			<props>
+				<prop key="hibernate.dialect">${hibernate.dialect}</prop>
+				<prop key="hibernate.hbm2ddl.auto">${hibernate.hbm2ddl.auto}</prop>
+				<prop key="hibernate.show_sql">${hibernate.show_sql}</prop>
+				<prop key="hibernate.cache.use_query_cache">${hibernate.cache.use_query_cache}</prop>
+				<prop key="hibernate.cache.use_second_level_cache">${hibernate.cache.use_second_level_cache}
+				</prop>
+				<prop key="hibernate.cache.provider_class">${hibernate.cache.provider}</prop>
+				<prop key="hibernate.cache.region.factory_class">${hibernate.cache.region.factory}</prop>
+				<prop key="hibernate.jdbc.time_zone">${hibernate.jdbc.time_zone}</prop>
+			</props>
+		</property>
+	</bean>
+	<tx:annotation-driven proxy-target-class="true"
+		transaction-manager="transactionManager" />
+
+	<bean id="transactionManager" class="org.springframework.orm.jpa.JpaTransactionManager">
+		<property name="entityManagerFactory" ref="entityManagerFactory" />
+	</bean>
+
+	<bean id="transactionTemplate"
+		class="org.springframework.transaction.support.TransactionTemplate">
+		<constructor-arg ref="transactionManager" />
+	</bean>
+	<bean id="txManager"
+		class="org.springframework.jdbc.datasource.DataSourceTransactionManager">
+		<property name="dataSource" ref="sqliteDataSource" />
+	</bean>
+
+	<!-- Initialization -->
+	<bean id="initializator" class="de.ids_mannheim.de.init.LiteInitializatorImpl"
+		init-method="init">
+	</bean>
+	<bean id="annotationParser" class="de.ids_mannheim.korap.annotation.AnnotationParser"
+		scope="singleton" />
+
+	<!-- Krill -->
+	<bean id="search_krill" class="de.ids_mannheim.korap.web.SearchKrill">
+		<constructor-arg value="${krill.indexDir}" />
+	</bean>
+
+	<!-- Filters -->
+	<bean id="APIVersionFilter" class="de.ids_mannheim.korap.web.APIVersionFilter"
+		scope="singleton" />
+
+	<!-- Authentication -->
+	<bean id="authenticationManager"
+		class="de.ids_mannheim.korap.authentication.DummyAuthenticationManager" />
+
+	<!-- Response handler -->
+	<bean id="kustvaktResponseHandler" class="de.ids_mannheim.korap.web.KustvaktResponseHandler">
+		<constructor-arg index="0" name="iface" ref="kustvakt_auditing" />
+	</bean>
+
+	<!-- Controllers -->
+	<bean id="annotationController"
+		class="de.ids_mannheim.korap.web.controller.AnnotationController" />
+	<bean id="searchController" class="de.ids_mannheim.korap.web.controller.SearchController" />
+	<bean id="statisticController"
+		class="de.ids_mannheim.korap.web.controller.StatisticController" />
+
+	<!-- Services -->
+	<bean id="annotationService" class="de.ids_mannheim.korap.service.AnnotationService"></bean>
+	<bean id="scopeService"
+		class="de.ids_mannheim.korap.oauth2.service.DummyOAuth2ScopeServiceImpl" />
+	<bean id="searchService" class="de.ids_mannheim.korap.service.SearchService"></bean>
+
+	<!-- DAO -->
+	<bean id="adminDao" class="de.ids_mannheim.korap.dao.DummyAdminDaoImpl" />
+	<bean id="annotationDao" class="de.ids_mannheim.korap.dao.AnnotationDao" />
+
+	<!-- DTO Converter -->
+	<bean id="annotationConverter" class="de.ids_mannheim.korap.dto.converter.AnnotationConverter" />
+
+	<!-- Rewrite -->
+	<bean id="rewriteHandler" class="de.ids_mannheim.korap.resource.rewrite.RewriteHandler">
+		<constructor-arg ref="config" />
+	</bean>
+
+
+
+	<bean id="kustvakt_auditing"
+		class="de.ids_mannheim.korap.interfaces.defaults.DefaultAuditing">
+	</bean>
+
 </beans>
\ No newline at end of file
diff --git a/lite/src/main/resources/lite-jdbc.properties b/lite/src/main/resources/lite-jdbc.properties
new file mode 100644
index 0000000..99e2e54
--- /dev/null
+++ b/lite/src/main/resources/lite-jdbc.properties
@@ -0,0 +1,9 @@
+#-------------------------------------------------------------------------------
+# Sqlite Settings
+
+jdbc.database=sqlite
+jdbc.driverClassName=org.sqlite.JDBC
+jdbc.url=jdbc:sqlite:liteDB.sqlite
+jdbc.username=pc
+jdbc.password=pc
+jdbc.schemaPath=db
\ No newline at end of file
diff --git a/lite/src/main/resources/log4j2.properties b/lite/src/main/resources/log4j2.properties
index f5e5366..b0115e7 100644
--- a/lite/src/main/resources/log4j2.properties
+++ b/lite/src/main/resources/log4j2.properties
@@ -20,8 +20,8 @@
 logger.console.appenderRefs = stdout
 logger.console.appenderRef.file.ref = STDOUT
 
-#loggers=file
-#logger.file.name=de.ids_mannheim.korap
-#logger.file.level = error
-#logger.file.appenderRefs = file
-#logger.file.appenderRef.file.ref = ERRORLOG
\ No newline at end of file
+loggers=file
+logger.file.name=de.ids_mannheim.korap
+logger.file.level = error
+logger.file.appenderRefs = file
+logger.file.appenderRef.file.ref = ERRORLOG
\ No newline at end of file