Renamed AuthFilter and moved it to /full.

Change-Id: I5d27d09c9c978a0a2cc2ead8c830438712ee4c16
diff --git a/full/src/main/java/de/ids_mannheim/korap/handlers/EntityDao.java b/full/src/main/java/de/ids_mannheim/korap/handlers/EntityDao.java
index 19e091c..3d75697 100644
--- a/full/src/main/java/de/ids_mannheim/korap/handlers/EntityDao.java
+++ b/full/src/main/java/de/ids_mannheim/korap/handlers/EntityDao.java
@@ -36,7 +36,7 @@
  * of database or other persistence mechanism. By mapping application calls to the persistence layer, the DAO provides 
  * some specific data operations without exposing details of the database. 
  */
-
+@Deprecated
 /**
  * @author hanl
  * @date 13/01/2014
diff --git a/full/src/main/java/de/ids_mannheim/korap/security/auth/KustvaktAuthenticationManager.java b/full/src/main/java/de/ids_mannheim/korap/security/auth/KustvaktAuthenticationManager.java
index f5258c1..31d5f46 100644
--- a/full/src/main/java/de/ids_mannheim/korap/security/auth/KustvaktAuthenticationManager.java
+++ b/full/src/main/java/de/ids_mannheim/korap/security/auth/KustvaktAuthenticationManager.java
@@ -160,7 +160,7 @@
 		}
 	}
 
-	/**
+	/** EM: fix type is not flexible
 	 * @param type
 	 * @param attributes
 	 *            contains username and password to authenticate the user.
diff --git a/full/src/main/java/de/ids_mannheim/korap/web/controller/AnnotationController.java b/full/src/main/java/de/ids_mannheim/korap/web/controller/AnnotationController.java
index dbeb447..46ffcd4 100644
--- a/full/src/main/java/de/ids_mannheim/korap/web/controller/AnnotationController.java
+++ b/full/src/main/java/de/ids_mannheim/korap/web/controller/AnnotationController.java
@@ -21,9 +21,9 @@
 
 import de.ids_mannheim.korap.exceptions.KustvaktException;
 import de.ids_mannheim.korap.exceptions.StatusCodes;
-import de.ids_mannheim.korap.filter.AuthFilter;
 import de.ids_mannheim.korap.service.AnnotationService;
 import de.ids_mannheim.korap.utils.JsonUtils;
+import de.ids_mannheim.korap.web.filter.AuthenticationFilter;
 import de.ids_mannheim.korap.web.filter.DemoUserFilter;
 import de.ids_mannheim.korap.web.filter.PiwikFilter;
 import de.ids_mannheim.korap.web.utils.KustvaktResponseHandler;
@@ -36,7 +36,7 @@
  */
 @Controller
 @Path("annotation/")
-@ResourceFilters({ AuthFilter.class, DemoUserFilter.class, PiwikFilter.class })
+@ResourceFilters({ AuthenticationFilter.class, DemoUserFilter.class, PiwikFilter.class })
 @Produces(MediaType.APPLICATION_JSON + ";charset=utf-8")
 public class AnnotationController {
 
diff --git a/full/src/main/java/de/ids_mannheim/korap/web/controller/AuthenticationController.java b/full/src/main/java/de/ids_mannheim/korap/web/controller/AuthenticationController.java
index 75a772e..43b17cc 100644
--- a/full/src/main/java/de/ids_mannheim/korap/web/controller/AuthenticationController.java
+++ b/full/src/main/java/de/ids_mannheim/korap/web/controller/AuthenticationController.java
@@ -31,7 +31,6 @@
 import de.ids_mannheim.korap.config.BeansFactory;
 import de.ids_mannheim.korap.exceptions.KustvaktException;
 import de.ids_mannheim.korap.exceptions.StatusCodes;
-import de.ids_mannheim.korap.filter.AuthFilter;
 import de.ids_mannheim.korap.interfaces.AuthenticationManagerIface;
 import de.ids_mannheim.korap.security.auth.BasicHttpAuth;
 import de.ids_mannheim.korap.user.TokenContext;
@@ -39,6 +38,7 @@
 import de.ids_mannheim.korap.utils.JsonUtils;
 import de.ids_mannheim.korap.utils.KustvaktLogger;
 import de.ids_mannheim.korap.utils.ServiceInfo;
+import de.ids_mannheim.korap.web.filter.AuthenticationFilter;
 import de.ids_mannheim.korap.web.filter.BlockingFilter;
 import de.ids_mannheim.korap.web.filter.DemoUserFilter;
 import de.ids_mannheim.korap.web.filter.PiwikFilter;
@@ -100,7 +100,7 @@
     // fixme: moved to user
     @GET
     @Path("status")
-    @ResourceFilters({ AuthFilter.class, DemoUserFilter.class,
+    @ResourceFilters({ AuthenticationFilter.class, DemoUserFilter.class,
             BlockingFilter.class })
     public Response getStatus (@Context SecurityContext context,
             @HeaderParam(ContainerRequest.USER_AGENT) String agent,
@@ -326,7 +326,7 @@
     //fixme: moved from userservice
     @GET
     @Path("logout")
-    @ResourceFilters({ AuthFilter.class, DemoUserFilter.class,
+    @ResourceFilters({ AuthenticationFilter.class, DemoUserFilter.class,
             PiwikFilter.class })
     public Response logout (@Context SecurityContext ctx,
             @Context Locale locale) {
diff --git a/full/src/main/java/de/ids_mannheim/korap/web/controller/OAuthController.java b/full/src/main/java/de/ids_mannheim/korap/web/controller/OAuthController.java
index 2bc03d7..33163fd 100644
--- a/full/src/main/java/de/ids_mannheim/korap/web/controller/OAuthController.java
+++ b/full/src/main/java/de/ids_mannheim/korap/web/controller/OAuthController.java
@@ -5,7 +5,6 @@
 import de.ids_mannheim.korap.config.*;
 import de.ids_mannheim.korap.exceptions.KustvaktException;
 import de.ids_mannheim.korap.exceptions.StatusCodes;
-import de.ids_mannheim.korap.filter.AuthFilter;
 import de.ids_mannheim.korap.handlers.OAuth2Handler;
 import de.ids_mannheim.korap.interfaces.AuthenticationManagerIface;
 import de.ids_mannheim.korap.interfaces.EncryptionIface;
@@ -13,6 +12,7 @@
 import de.ids_mannheim.korap.user.*;
 import de.ids_mannheim.korap.utils.JsonUtils;
 import de.ids_mannheim.korap.utils.StringUtils;
+import de.ids_mannheim.korap.web.filter.AuthenticationFilter;
 import de.ids_mannheim.korap.web.filter.BlockingFilter;
 import de.ids_mannheim.korap.web.filter.DemoUserFilter;
 import de.ids_mannheim.korap.web.filter.PiwikFilter;
@@ -77,7 +77,7 @@
 
     @POST
     @Path("unregister")
-    @ResourceFilters({ AuthFilter.class, BlockingFilter.class })
+    @ResourceFilters({ AuthenticationFilter.class, BlockingFilter.class })
     public Response unregisterClient (@Context SecurityContext context,
             @HeaderParam("Host") String host,
             @QueryParam("client_secret") String secret,
@@ -98,7 +98,7 @@
 
     @POST
     @Path("register")
-    @ResourceFilters({ AuthFilter.class, BlockingFilter.class })
+    @ResourceFilters({ AuthenticationFilter.class, BlockingFilter.class })
     public Response registerClient (@Context SecurityContext context,
             @HeaderParam("Host") String host,
             @QueryParam("redirect_url") String rurl) {
@@ -125,7 +125,7 @@
 
     @GET
     @Path("info")
-    @ResourceFilters({ AuthFilter.class, DemoUserFilter.class, PiwikFilter.class })
+    @ResourceFilters({ AuthenticationFilter.class, DemoUserFilter.class, PiwikFilter.class })
     public Response getStatus (@Context SecurityContext context,
             @QueryParam("scope") String scopes) {
         TokenContext ctx = (TokenContext) context.getUserPrincipal();
@@ -150,7 +150,7 @@
 
     @GET
     @Path("authorizations")
-    @ResourceFilters({ AuthFilter.class, BlockingFilter.class })
+    @ResourceFilters({ AuthenticationFilter.class, BlockingFilter.class })
     public Response getAuthorizations (@Context SecurityContext context,
             @HeaderParam(ContainerRequest.USER_AGENT) String agent,
             @HeaderParam(ContainerRequest.HOST) String host) {
diff --git a/full/src/main/java/de/ids_mannheim/korap/web/controller/SearchController.java b/full/src/main/java/de/ids_mannheim/korap/web/controller/SearchController.java
index 3c4f33d..4579947 100644
--- a/full/src/main/java/de/ids_mannheim/korap/web/controller/SearchController.java
+++ b/full/src/main/java/de/ids_mannheim/korap/web/controller/SearchController.java
@@ -43,7 +43,6 @@
 import de.ids_mannheim.korap.config.KustvaktConfiguration.BACKENDS;
 import de.ids_mannheim.korap.exceptions.KustvaktException;
 import de.ids_mannheim.korap.exceptions.StatusCodes;
-import de.ids_mannheim.korap.filter.AuthFilter;
 import de.ids_mannheim.korap.interfaces.AuthenticationManagerIface;
 import de.ids_mannheim.korap.query.serialize.MetaQueryBuilder;
 import de.ids_mannheim.korap.query.serialize.QuerySerializer;
@@ -64,6 +63,7 @@
 import de.ids_mannheim.korap.utils.StringUtils;
 import de.ids_mannheim.korap.web.ClientsHandler;
 import de.ids_mannheim.korap.web.SearchKrill;
+import de.ids_mannheim.korap.web.filter.AuthenticationFilter;
 import de.ids_mannheim.korap.web.filter.DemoUserFilter;
 import de.ids_mannheim.korap.web.filter.PiwikFilter;
 import de.ids_mannheim.korap.web.utils.KustvaktResponseHandler;
@@ -79,7 +79,7 @@
 @Controller
 @Path("/")
 @RequestMapping("/")
-@ResourceFilters({ AuthFilter.class, DemoUserFilter.class, PiwikFilter.class })
+@ResourceFilters({ AuthenticationFilter.class, DemoUserFilter.class, PiwikFilter.class })
 @Produces(MediaType.APPLICATION_JSON + ";charset=utf-8")
 public class SearchController {
 
diff --git a/full/src/main/java/de/ids_mannheim/korap/web/controller/UserController.java b/full/src/main/java/de/ids_mannheim/korap/web/controller/UserController.java
index b181178..34b1875 100644
--- a/full/src/main/java/de/ids_mannheim/korap/web/controller/UserController.java
+++ b/full/src/main/java/de/ids_mannheim/korap/web/controller/UserController.java
@@ -41,7 +41,6 @@
 import de.ids_mannheim.korap.config.URIParam;
 import de.ids_mannheim.korap.exceptions.KustvaktException;
 import de.ids_mannheim.korap.exceptions.StatusCodes;
-import de.ids_mannheim.korap.filter.AuthFilter;
 import de.ids_mannheim.korap.interfaces.AuthenticationManagerIface;
 import de.ids_mannheim.korap.user.KorAPUser;
 import de.ids_mannheim.korap.user.TokenContext;
@@ -53,6 +52,7 @@
 import de.ids_mannheim.korap.utils.JsonUtils;
 import de.ids_mannheim.korap.utils.StringUtils;
 import de.ids_mannheim.korap.utils.TimeUtils;
+import de.ids_mannheim.korap.web.filter.AuthenticationFilter;
 import de.ids_mannheim.korap.web.filter.BlockingFilter;
 import de.ids_mannheim.korap.web.filter.DemoUserFilter;
 import de.ids_mannheim.korap.web.filter.PiwikFilter;
@@ -137,7 +137,7 @@
     @POST
     @Path("update")
     @Consumes(MediaType.APPLICATION_JSON)
-    @ResourceFilters({ AuthFilter.class, PiwikFilter.class,
+    @ResourceFilters({ AuthenticationFilter.class, PiwikFilter.class,
             BlockingFilter.class })
     public Response updateAccount (@Context SecurityContext ctx, String json) {
         TokenContext context = (TokenContext) ctx.getUserPrincipal();
@@ -261,7 +261,7 @@
     // todo: refactor and make something out of if --> needs to give some sort of feedback!
     @GET
     @Path("info")
-    @ResourceFilters({ AuthFilter.class, PiwikFilter.class,
+    @ResourceFilters({ AuthenticationFilter.class, PiwikFilter.class,
             BlockingFilter.class })
     public Response getStatus (@Context SecurityContext context,
             @QueryParam("scopes") String scopes) {
@@ -292,7 +292,7 @@
 
     @GET
     @Path("settings")
-    @ResourceFilters({ AuthFilter.class, DemoUserFilter.class,
+    @ResourceFilters({ AuthenticationFilter.class, DemoUserFilter.class,
             PiwikFilter.class, BlockingFilter.class })
     public Response getUserSettings (@Context SecurityContext context,
             @Context Locale locale) {
@@ -315,7 +315,7 @@
     @POST
     @Path("settings")
     @Consumes({ MediaType.APPLICATION_JSON })
-    @ResourceFilters({ AuthFilter.class, PiwikFilter.class,
+    @ResourceFilters({ AuthenticationFilter.class, PiwikFilter.class,
             BlockingFilter.class })
     public Response updateSettings (@Context SecurityContext context,
             @Context Locale locale, Map settings) {
@@ -352,7 +352,7 @@
 
     @GET
     @Path("details")
-    @ResourceFilters({ AuthFilter.class, DemoUserFilter.class,
+    @ResourceFilters({ AuthenticationFilter.class, DemoUserFilter.class,
             PiwikFilter.class, BlockingFilter.class })
     public Response getDetails (@Context SecurityContext context,
             @Context Locale locale, @QueryParam("pointer") String pointer) {
@@ -378,7 +378,7 @@
     @POST
     @Path("details")
     @Consumes({ MediaType.APPLICATION_JSON })
-    @ResourceFilters({ AuthFilter.class, PiwikFilter.class,
+    @ResourceFilters({ AuthenticationFilter.class, PiwikFilter.class,
             BlockingFilter.class })
     public Response updateDetails (@Context SecurityContext context,
             @Context Locale locale, Map details) {
@@ -411,7 +411,7 @@
     @POST
     @Path("queries")
     @Consumes(MediaType.APPLICATION_JSON)
-    @ResourceFilters({ AuthFilter.class, PiwikFilter.class,
+    @ResourceFilters({ AuthenticationFilter.class, PiwikFilter.class,
             BlockingFilter.class })
     public Response updateQueries (@Context SecurityContext context,
             String json) {
@@ -469,7 +469,7 @@
 
 
     @DELETE
-    @ResourceFilters({ AuthFilter.class, PiwikFilter.class,
+    @ResourceFilters({ AuthenticationFilter.class, PiwikFilter.class,
             BlockingFilter.class })
     public Response deleteUser (@Context SecurityContext context) {
         TokenContext ctx = (TokenContext) context.getUserPrincipal();
@@ -488,7 +488,7 @@
 
     @GET
     @Path("queries")
-    @ResourceFilters({ AuthFilter.class, DemoUserFilter.class,
+    @ResourceFilters({ AuthenticationFilter.class, DemoUserFilter.class,
             PiwikFilter.class, BlockingFilter.class })
     public Response getQueries (@Context SecurityContext context,
             @Context Locale locale) {
diff --git a/full/src/main/java/de/ids_mannheim/korap/web/controller/VirtualCorpusController.java b/full/src/main/java/de/ids_mannheim/korap/web/controller/VirtualCorpusController.java
index aafaa10..50eb392 100644
--- a/full/src/main/java/de/ids_mannheim/korap/web/controller/VirtualCorpusController.java
+++ b/full/src/main/java/de/ids_mannheim/korap/web/controller/VirtualCorpusController.java
@@ -17,13 +17,13 @@
 
 import de.ids_mannheim.korap.exceptions.KustvaktException;
 import de.ids_mannheim.korap.exceptions.StatusCodes;
-import de.ids_mannheim.korap.filter.AuthFilter;
 import de.ids_mannheim.korap.interfaces.AuthenticationManagerIface;
 import de.ids_mannheim.korap.service.VirtualCorpusService;
 import de.ids_mannheim.korap.user.TokenContext;
 import de.ids_mannheim.korap.user.User;
 import de.ids_mannheim.korap.utils.JsonUtils;
 import de.ids_mannheim.korap.utils.ParameterChecker;
+import de.ids_mannheim.korap.web.filter.AuthenticationFilter;
 import de.ids_mannheim.korap.web.filter.DemoUserFilter;
 import de.ids_mannheim.korap.web.filter.PiwikFilter;
 import de.ids_mannheim.korap.web.input.VirtualCorpusFromJson;
@@ -32,7 +32,7 @@
 @Controller
 @Path("vc")
 @Produces(MediaType.APPLICATION_JSON + ";charset=utf-8")
-@ResourceFilters({ AuthFilter.class, DemoUserFilter.class, PiwikFilter.class })
+@ResourceFilters({ AuthenticationFilter.class, DemoUserFilter.class, PiwikFilter.class })
 public class VirtualCorpusController {
 
     private static Logger jlog =
diff --git a/full/src/main/java/de/ids_mannheim/korap/filter/AuthFilter.java b/full/src/main/java/de/ids_mannheim/korap/web/filter/AuthenticationFilter.java
similarity index 94%
rename from full/src/main/java/de/ids_mannheim/korap/filter/AuthFilter.java
rename to full/src/main/java/de/ids_mannheim/korap/web/filter/AuthenticationFilter.java
index 146879d..5f92c1b 100644
--- a/full/src/main/java/de/ids_mannheim/korap/filter/AuthFilter.java
+++ b/full/src/main/java/de/ids_mannheim/korap/web/filter/AuthenticationFilter.java
@@ -1,4 +1,4 @@
-package de.ids_mannheim.korap.filter;
+package de.ids_mannheim.korap.web.filter;
 
 import com.sun.jersey.spi.container.ContainerRequest;
 import com.sun.jersey.spi.container.ContainerRequestFilter;
@@ -22,7 +22,7 @@
  */
 @Component
 @Provider
-public class AuthFilter implements ContainerRequestFilter, ResourceFilter {
+public class AuthenticationFilter implements ContainerRequestFilter, ResourceFilter {
 
     @Autowired
     private AuthenticationManagerIface userController;
diff --git a/full/src/main/resources/log4j.properties b/full/src/main/resources/log4j.properties
index 2b8d2a1..35aad91 100644
--- a/full/src/main/resources/log4j.properties
+++ b/full/src/main/resources/log4j.properties
@@ -4,6 +4,9 @@
 log4j.rootLogger=ERROR, stdout, debugLog
 log4j.logger.log=ERROR, errorLog
 
+log4j.logger.de.ids_mannheim.korap.service.VirtualCorpusService = error, debugLog
+log4j.logger.de.ids_mannheim.korap.web.SearchKrill = debug, debugLog, stdout
+
 # Direct log messages to stdout
 log4j.appender.stdout=org.apache.log4j.ConsoleAppender
 log4j.appender.stdout.Target=System.out