gh-actions: setup R with r-lib/actions also on linux
rpy2 does not seem to find R packages otherwise
Change-Id: Iec4c1cdad990825ee3ab44e51d0b1330158305b4
diff --git a/.github/workflows/pythonpackage.yml b/.github/workflows/pythonpackage.yml
index 6eba34c..0dc1ba5 100644
--- a/.github/workflows/pythonpackage.yml
+++ b/.github/workflows/pythonpackage.yml
@@ -7,6 +7,7 @@
runs-on: ${{ matrix.os }}
strategy:
+ max-parallel: 4
fail-fast: false
matrix:
python-version: [3.7, 3.8]
@@ -43,14 +44,14 @@
uses: r-lib/actions/setup-r@master
with:
r-version: ${{ matrix.r-version }}
- if: runner.os != 'Linux'
+ if: runner.os != 'LinuxDisabled'
- name: Set up package maintainers R on Linux
run: |
sudo apt-get update -y
sudo apt-get install -y r-base r-base-dev r-cran-tidyverse r-cran-r.utils r-cran-pixmap r-cran-webshot r-cran-ade4 r-cran-segmented r-cran-purrr r-cran-dygraphs r-cran-cvst r-cran-quantmod r-cran-graphlayouts r-cran-rappdirs r-cran-ggdendro r-cran-seqinr r-cran-heatmaply r-cran-igraph r-cran-plotly libcurl4-gnutls-dev libssl-dev libxml2-dev libsodium-dev python3-pip python3-rpy2 python3-pandas
sudo chown $USER /usr/local/lib/R/site-library
export R_LIBS_USER=/usr/local/lib/R/site-library
- if: runner.os == 'Linux'
+ if: runner.os == 'LinuxDisabled'
- name: Install R dependencies
run: Rscript -e "install.packages('RKorAPClient')"
- name: Cache R packages on Linux