Clean up debug logging after confirming dependency fix

The dependency annotations issue is now resolved. Both malt and spacy
dependency annotations are correctly included in the krill output.

The root cause was the incremental writer outputting texts before all
dependency.xml files finished processing. By disabling incremental output
(previous commit), all processing completes before output generation.

Verification:
- Both spacy/dependency and malt/dependency appear in foundries list
- Dependency annotations present in stream for both foundries
- All foundries show correct data: base, marmot, spacy, malt, treetagger

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude <noreply@anthropic.com>

Change-Id: I2d3231a45d1d87756b5381f4340181ac72b1fc66
diff --git a/app/src/main/kotlin/de/ids_mannheim/korapxmltools/KorapXmlTool.kt b/app/src/main/kotlin/de/ids_mannheim/korapxmltools/KorapXmlTool.kt
index e445e26..179bc6d 100644
--- a/app/src/main/kotlin/de/ids_mannheim/korapxmltools/KorapXmlTool.kt
+++ b/app/src/main/kotlin/de/ids_mannheim/korapxmltools/KorapXmlTool.kt
@@ -1355,9 +1355,6 @@
                         // For krill format, collect dependency data directly without using shared morpho map
                         if (outputFormat == OutputFormat.KRILL) {
                             val depFoundry = getFoundryForLayer(foundry, "dependency")
-                            // Debug: check if depMap has actual dependency data
-                            val depsWithData = depMap.filter { it.value.head != null && it.value.head != "_" && it.value.deprel != null && it.value.deprel != "_" }.size
-                            LOGGER.fine("About to collect dependency data for $docId, foundry=$depFoundry, format=$outputFormat, total=${depMap.size}, withData=$depsWithData")
                             collectKrillMorphoDataDirect(docId, depFoundry, depMap, "dependency")
                         } else {
                             // For other formats, merge dependency info into existing morpho data
@@ -2868,10 +2865,7 @@
     // This version takes the morpho data as a parameter to avoid contamination from other foundries
     private fun collectKrillMorphoDataDirect(docId: String, foundry: String, morphoDataMap: MutableMap<String, MorphoSpan>, annotationType: String = "morpho") {
         // Skip if already output (thread-safe check with ConcurrentHashMap.KeySet)
-        if (outputTexts.contains(docId)) {
-            LOGGER.fine("Skipping collection for $docId/$foundry/$annotationType: already output")
-            return
-        }
+        if (outputTexts.contains(docId)) return
 
         LOGGER.info("Collecting krill $annotationType data (direct) for $docId, foundry=$foundry, morpho=${morphoDataMap.size}")
 
@@ -2899,12 +2893,9 @@
                 filteredSpan
             }.toMutableMap()
 
-            LOGGER.fine("Filtered $annotationType data: original=${morphoDataMap.size}, filtered=${morphoDataCopy.size}")
-
             synchronized(textData) {
                 // Merge with existing morpho data for this foundry (don't overwrite)
                 val existingFoundryData = textData.morphoByFoundry[foundry]
-                LOGGER.fine("  existingFoundryData for $foundry is ${if (existingFoundryData == null) "null" else "present (${existingFoundryData.size} entries)"}")
                 if (existingFoundryData == null) {
                     // First time collecting this foundry - just copy
                     textData.morphoByFoundry[foundry] = morphoDataCopy
@@ -3653,16 +3644,6 @@
         val inverseDeps = mutableMapOf<Int, MutableList<InverseDep>>()
         val rootTokens = mutableListOf<RootDep>()
 
-        // Debug: log foundries and first token's dependency data
-        if (tokens.isNotEmpty()) {
-            val firstSpanKey = "${tokens[0].from}-${tokens[0].to}"
-            LOGGER.fine("Generating krill stream: foundries=${textData.morphoByFoundry.keys}")
-            textData.morphoByFoundry.forEach { (foundry, morphoMap) ->
-                val span = morphoMap[firstSpanKey]
-                LOGGER.fine("  Foundry $foundry: span=$span, head=${span?.head}, deprel=${span?.deprel}")
-            }
-        }
-
         tokens.forEachIndexed { index, token ->
             val spanKey = "${token.from}-${token.to}"
             textData.morphoByFoundry.keys.forEach { foundry ->