CollocatorDB: Storing and retrieving collocation counts based on RocksDB

Installation

Install RocksDB and prerequisites

• on CentOS, Fedora, RHEL

  sudo yum install cmake3 snappy snappy-devel zlib zlib-devel bzip2 bzip2-devel lz4-devel libzstd-devel libomp-devel
  
  git clone https://github.com/gflags/gflags.git
  cd gflags
  git checkout v2.0
  ./configure && make && sudo make install
  cd ..
  

• on Ubuntu, Debian

  sudo apt-get install cmake libgflags-dev libsnappy-dev zlib1g-dev libbz2-dev liblz4-dev libzstd-dev libomp-dev
  

• on MacOS

  brew install cmake snappy zlib bzip2 lz4 zstd libomp gflags
  

• install our fork of RocksDB v5.11.3.fb

  • on Linux

    git clone https://github.com/kupietz/rocksdb.git -b 5.11.fb --single-branch
    cd rocksdb
    make -j $(nproc) static_lib DISABLE_WARNING_AS_ERROR=1 && sudo make install-static DISABLE_WARNING_AS_ERROR=1
    make -j $(nproc) shared_lib DISABLE_WARNING_AS_ERROR=1 && sudo make install-shared DISABLE_WARNING_AS_ERROR=1
    cd build
    ldconfig
    

  • on MacOS

    git clone https://github.com/kupietz/rocksdb.git -b 5.11.fb --single-branch
    cd rocksdb
    mkdir -f build
    cd build
    cmake .. -DWITH_SNAPPY=1 -DWITH_LZ4=1 -DWITH_ZLIB=1 -DWITH_GFLAGS=1 -DCMAKE_INSTALL_LIBDIR=/usr/local/lib
    make -j $(sysctl -n hw.ncpu) && sudo make install
    

Install CollocatorDB

git clone "https://korap.ids-mannheim.de/gerrit/ids-kl/collocatordb"
cd collocatordb
mkdir -p build
cd build
cmake -DCMAKE_INSTALL_PREFIX=/usr/local ..
make && ctest --extra-verbose && sudo make install

Provided API

typedef struct {
  uint32_t w2;
  uint64_t f2;
  uint64_t raw;
  double pmi;
  double npmi;
  double llr;
  double lfmd;
  double md;
  double md_nws;
  uint64_t left_raw;
  uint64_t right_raw;
  double left_pmi;
  double right_pmi;
  double dice;
  double logdice;
  double ldaf;
  int window;
  int af_window;
} COLLOCATOR ;

COLLOCATORDB *open_collocatordb(const char *s);
COLLOCATORDB *open_collocatordb_for_write(const char *s);
void inc_collocator(COLLOCATORDB *db, uint64_t w1, uint64_t w2, int8_t dist);
void dump_collocators(COLLOCATORDB *db, uint32_t w1, uint32_t w2, int8_t dist);
COLLOCATOR *get_collocators(COLLOCATORDB *db, uint32_t w1);
COLLOCATOR *get_collocation_scores(COLLOCATORDB *db, uint32_t w1, uint32_t w2);
char *get_collocators_as_json(COLLOCATORDB *db, uint32_t w1);
char *get_collocation_scores_as_json(COLLOCATORDB *db, uint32_t w1, uint32_t w2);
char *get_word(COLLOCATORDB *db, uint32_t w1);
void read_vocab(COLLOCATORDB *db, char *fname);
char *get_version();

Changes

• added md_nws MI² score based on nominal window size (=10) instead of actual window size, for which only positions are counted where the collocate actually occurs

• v1.3.2 (2024-11-15)

  • added get_version(), which returns version string

• v1.3.1 (2024-11-14)

  • fixed calculation of total token count

TODO

• extend API
• add more unit tests

License

Based on RocksDB, CollocatorDB is dual-licensed under both the GPLv2 (found in the COPYING file in the root directory) and Apache 2.0 License (found in the LICENSE.Apache file in the root directory). You may select, at your option, one of the above-listed licenses.