Hao Zhu | 2a64dc6 | 2017-08-28 10:57:57 -0400 | [diff] [blame] | 1 | #' Convert a LaTeX table to an image and place it in a rmarkdown document |
| 2 | #' |
| 3 | #' @description This is a LaTeX-only function. This function will render the |
| 4 | #' raw LaTeX code (could be codes generated by other table packages like |
| 5 | #' `xtable`) to generate a table, convert it to an image and put it back to a |
| 6 | #' rmarkdown environment. It is a "better than nothing" solution to print high |
| 7 | #' quality tables in rmarkdown Word document. By using this, you need to take |
Hao Zhu | 245931c | 2017-09-01 22:43:56 -0400 | [diff] [blame] | 8 | #' the responsibility of explaining to your collaborators why they can't make |
Hao Zhu | a9c43dc | 2017-09-04 23:00:39 -0400 | [diff] [blame] | 9 | #' edits to the tables in Word. |
Hao Zhu | 2a64dc6 | 2017-08-28 10:57:57 -0400 | [diff] [blame] | 10 | #' |
| 11 | #' Also, if a filename is provided, user has the option to "save" the table to |
| 12 | #' an image file like `ggplot2::ggsave()`. |
| 13 | #' |
Hao Zhu | 246b95c | 2017-09-14 14:29:48 -0400 | [diff] [blame] | 14 | #' Note that, if you are using this function on a Windows computer, you need |
| 15 | #' to install Ghostscript before you can use this feature. It is essential for |
| 16 | #' magick to read PDFs on Windows. Website for Ghostscript: https://ghostscript.com/ |
| 17 | #' |
Hao Zhu | 2a64dc6 | 2017-08-28 10:57:57 -0400 | [diff] [blame] | 18 | #' The idea of this function was coming from [this StackOverflow question](https://stackoverflow.com/questions/44711313/save-rmarkdowns-report-tables-and-figures-to-file). |
| 19 | #' The approach was learned and adopted from the [texpreview](https://github.com/metrumresearchgroup/texPreview) |
| 20 | #' package, which allows you to preview the results of TeX code in the Viewer panel. |
| 21 | #' |
| 22 | #' @param kable_input Raw LaTeX code to generate a table. It doesn't have to |
| 23 | #' came from `kable` or `kableExtra`. |
| 24 | #' @param filename Character String. If specified, the image will be saved under |
| 25 | #' the specified (path &) name. You don't need to put file format like ".png" |
| 26 | #' here. |
| 27 | #' @param file_format Character String to specify image format, such as `png`, |
| 28 | #' `jpeg`, `gif`, `tiff`, etc. Default is `png`. |
| 29 | #' @param latex_header_includes A character vector of extra LaTeX header stuff. |
| 30 | #' Each element is a row. You can have things like |
Hao Zhu | cd42793 | 2018-04-04 15:15:58 -0400 | [diff] [blame] | 31 | #' `c("\\\\usepackage{threeparttable}", "\\\\usepackage{icons}")` |
Hao Zhu | 2a64dc6 | 2017-08-28 10:57:57 -0400 | [diff] [blame] | 32 | #' @param keep_pdf A T/F option to control if the mid-way standalone pdf should |
| 33 | #' be kept. Default is `FALSE`. |
Hao Zhu | 4840bc9 | 2017-09-15 15:55:05 -0400 | [diff] [blame] | 34 | #' @param density Resolution to read the PDF file. Default value is 300, which |
| 35 | #' should be sufficient in most cases. |
Salzer | 27eb90b | 2018-02-11 16:14:04 -0500 | [diff] [blame] | 36 | #' @param keep_tex A T/F option to control if the latex file that is initially created |
| 37 | #' should be kept. Default is `FALSE`. |
Hao Zhu | 2a64dc6 | 2017-08-28 10:57:57 -0400 | [diff] [blame] | 38 | #' |
Hao Zhu | 2a64dc6 | 2017-08-28 10:57:57 -0400 | [diff] [blame] | 39 | #' @export |
| 40 | kable_as_image <- function(kable_input, filename = NULL, |
| 41 | file_format = "png", |
| 42 | latex_header_includes = NULL, |
Hao Zhu | 4840bc9 | 2017-09-15 15:55:05 -0400 | [diff] [blame] | 43 | keep_pdf = FALSE, |
Salzer | 27eb90b | 2018-02-11 16:14:04 -0500 | [diff] [blame] | 44 | density = 300, |
| 45 | keep_tex = FALSE) { |
Hao Zhu | 4840bc9 | 2017-09-15 15:55:05 -0400 | [diff] [blame] | 46 | if (!requireNamespace("magick", quietly = TRUE)) { |
| 47 | stop('kable_as_image requires the magick package, which is not available ', |
| 48 | 'on all platforms. Please get it installed ', |
| 49 | 'via install.packages("magick"). If you are running on Windows, you ', |
| 50 | 'also need to install Ghostscript. Please download it here:', |
| 51 | 'https://ghostscript.com/') |
Hao Zhu | 2a64dc6 | 2017-08-28 10:57:57 -0400 | [diff] [blame] | 52 | } else { |
Hao Zhu | 4840bc9 | 2017-09-15 15:55:05 -0400 | [diff] [blame] | 53 | temp_tex <- c( |
| 54 | "\\documentclass[border=1mm, preview]{standalone}", |
| 55 | "\\usepackage[active,tightpage]{preview}", |
| 56 | "\\usepackage{varwidth}", |
| 57 | "\\usepackage{amssymb, amsmath}", |
| 58 | "\\usepackage{ifxetex,ifluatex}", |
| 59 | "\\usepackage{fixltx2e}", |
| 60 | "\\usepackage{polyglossia}", |
| 61 | "\\setmainlanguage{$mainlang$}", |
| 62 | latex_pkg_list(), |
| 63 | "\\usepackage{graphicx}", |
| 64 | "\\usepackage{mathspec}", |
| 65 | "\\usepackage{xltxtra,xunicode}", |
| 66 | latex_header_includes, |
| 67 | "\\begin{document}", |
Hao Zhu | 3fc0e88 | 2018-04-03 16:06:41 -0400 | [diff] [blame] | 68 | solve_enc(kable_input), |
Hao Zhu | 4840bc9 | 2017-09-15 15:55:05 -0400 | [diff] [blame] | 69 | "\\end{document}" |
| 70 | ) |
| 71 | temp_tex <- paste(temp_tex, collapse = "\n") |
| 72 | temp_file <- paste0("table_", format(Sys.time(), "%Y-%m-%d_%H%M%S")) |
antaldaniel | 2ea01fb | 2018-05-30 21:20:50 +0200 | [diff] [blame^] | 73 | writeLines(temp_tex, paste0(temp_file, ".tex"), useBytes = T) |
Hao Zhu | 4840bc9 | 2017-09-15 15:55:05 -0400 | [diff] [blame] | 74 | system(paste0("xelatex -interaction=batchmode ", temp_file, ".tex")) |
| 75 | temp_file_delete <- paste0(temp_file, c(".tex", ".aux", ".log")) |
Salzer | 27eb90b | 2018-02-11 16:14:04 -0500 | [diff] [blame] | 76 | if(!keep_tex) { |
| 77 | unlink(temp_file_delete) |
| 78 | } |
Hao Zhu | 2a64dc6 | 2017-08-28 10:57:57 -0400 | [diff] [blame] | 79 | |
Hao Zhu | 4840bc9 | 2017-09-15 15:55:05 -0400 | [diff] [blame] | 80 | table_img_pdf <- try(magick::image_read(paste0(temp_file, ".pdf"), |
| 81 | density = density), |
| 82 | silent = T) |
| 83 | if (class(table_img_pdf) == "try-error") { |
| 84 | stop("Ghostscript is required to read PDF on windows. ", |
| 85 | "Please download it here: https://ghostscript.com/") |
| 86 | } |
| 87 | if (!keep_pdf) { |
| 88 | unlink(paste0(temp_file, ".pdf")) |
| 89 | } |
| 90 | table_img <- magick::image_convert(table_img_pdf, file_format) |
| 91 | if (!is.null(filename)) { |
| 92 | temp_img <- paste0(filename, ".", file_format) |
| 93 | } else { |
| 94 | temp_img <- tempfile(fileext = paste0(".", file_format)) |
| 95 | } |
| 96 | magick::image_write(table_img, temp_img) |
| 97 | |
| 98 | include_graphics(temp_img) |
| 99 | } |
Hao Zhu | 2a64dc6 | 2017-08-28 10:57:57 -0400 | [diff] [blame] | 100 | } |