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Hao Zhu6a076462017-03-01 12:59:01 -05001---
2title: "Create Awesome LaTeX Table with knitr::kable and kableExtra"
3author: "Hao Zhu"
4date: "`r Sys.Date()`"
5output:
6 pdf_document:
7 toc: true
8 toc_depth: 2
Hao Zhu014d6212017-08-07 04:20:23 +08009header-includes:
10 - \usepackage{booktabs}
11 - \usepackage{longtable}
12 - \usepackage{array}
13 - \usepackage{multirow}
14 - \usepackage[table]{xcolor}
15 - \usepackage{wrapfig}
Hao Zhu245931c2017-09-01 22:43:56 -040016 - \usepackage{float}
Hao Zhu65216052017-09-04 13:01:29 -040017 - \usepackage{colortbl}
18 - \usepackage{pdflscape}
19 - \usepackage{tabu}
20 - \usepackage{threeparttable}
Hao Zhu5e4dd502018-04-05 12:01:58 -040021 - \usepackage{threeparttablex}
Hao Zhuef0c8302018-01-12 13:30:20 -050022 - \usepackage[normalem]{ulem}
Hao Zhu5e4dd502018-04-05 12:01:58 -040023 - \usepackage{makecell}
Hao Zhu014d6212017-08-07 04:20:23 +080024vignette: >
25 %\VignetteIndexEntry{Create Awesome PDF Table with knitr::kable and kableExtra}
26 %\VignetteEngine{knitr::rmarkdown}
27 %\VignetteEncoding{UTF-8}
Hao Zhu6a076462017-03-01 12:59:01 -050028---
29
Hao Zhu6a1cbb52017-10-24 15:54:50 -040030\clearpage
31
Hao Zhue1be9602017-08-17 15:44:31 -040032> Please see the package [documentation site](http://haozhu233.github.io/kableExtra) for how to use this package in HTML and more.
Hao Zhu014d6212017-08-07 04:20:23 +080033
Hao Zhu6a076462017-03-01 12:59:01 -050034# Overview
35The goal of `kableExtra` is to help you build common complex tables and manipulate table styles. It imports the pipe `%>%` symbol from `magrittr` and verbalize all the functions, so basically you can add "layers" to a kable output in a way that is similar with `ggplot2` and `plotly`.
36
Hao Zhu0a0e8332017-08-03 13:21:29 -040037To learn how to generate complex tables in LaTeX, please visit [http://haozhu233.github.io/kableExtra/awesome_table_in_html.html](http://haozhu233.github.io/kableExtra/awesome_table_in_html.html).
38
Hao Zhu6a076462017-03-01 12:59:01 -050039# Installation
Hao Zhu6a076462017-03-01 12:59:01 -050040```r
Hao Zhu74eb6ad2017-03-04 09:32:37 -050041install.packages("kableExtra")
42
Hao Zhu6a076462017-03-01 12:59:01 -050043# For dev version
Hao Zhuf9aa4c42017-05-22 15:53:35 -040044# install.packages("devtools")
Hao Zhu6a076462017-03-01 12:59:01 -050045devtools::install_github("haozhu233/kableExtra")
46```
Hao Zhuf9aa4c42017-05-22 15:53:35 -040047
Hao Zhu6a076462017-03-01 12:59:01 -050048# Getting Started
49Here we are using the first few columns and rows from dataset `mtcars`
50```{r}
51library(knitr)
52library(kableExtra)
53dt <- mtcars[1:5, 1:6]
54```
55
Hao Zhu65216052017-09-04 13:01:29 -040056When you are using `kable()`, if you don't specify `format`, by default it will generate a markdown table and let pandoc handle the conversion from markdown to HTML/PDF. This is the most favorable approach to render most simple tables as it is format independent. If you switch from HTML to pdf, you basically don't need to change anything in your code. However, markdown doesn't support complex table. For example, if you want to have a double-row header table, markdown just cannot provide you the functionality you need. As a result, when you have such a need, you should **define `format` in `kable()`** as either "html" or "latex". *You can also define a global option at the beginning using `options(knitr.table.format = "latex")` so you don't repeat the step everytime.* **In this tutorial, I'll still put `format="latex"` in the function in case users just want to quickly replicate the results.**
Hao Zhu6a076462017-03-01 12:59:01 -050057
58```{r}
59options(knitr.table.format = "latex")
60## If you don't define format here, you'll need put `format = "latex"`
61## in every kable function.
62```
63
Hao Zhuc761ee52017-09-04 13:04:35 -040064## LaTeX packages used in this package
Hao Zhu65216052017-09-04 13:01:29 -040065If you are using a recent version of rmarkdown, you are recommended to load this package entirely via `library(kableExtra)` or `require(kableExtra)` because this package will load all necessary LaTeX packages, such as `booktabs` or `multirow`, for you automatically. Note that, if you are calling functions from `kableExtra` via `kableExtra::kable_styling()` or if you put `library(kableExtra)` in a separate R file that is **sourced** by the rmarkdown document, these packages won't be loaded. Furthermore, you can suppress this auto-loading behavior by setting a global option `kableExtra.latex.load_packages` to be `FALSE` before you load `kableExtra`.
66
Hao Zhub350b9f2017-09-04 13:07:57 -040067```{r, eval = FALSE}
Hao Zhu2e318eb2017-09-04 13:18:42 -040068# Not evaluated. Ilustration purpose
Hao Zhu5ece06e2018-01-19 23:18:02 -050069options(kableExtra.latex.load_packages = FALSE)
Hao Zhu2e318eb2017-09-04 13:18:42 -040070library(kableExtra)
Hao Zhu65216052017-09-04 13:01:29 -040071```
72
Hao Zhuce5ee412017-10-23 01:14:38 -040073If you are using R Sweave, beamer, R package vignette template, tufte or some customized rmarkdown templates, you can put the following meta data into the `yaml` section. If you are familar with LaTeX and you know what you are doing, feel free to remove unnecessary packages from the list.
Hao Zhu65216052017-09-04 13:01:29 -040074
Hao Zhuce5ee412017-10-23 01:14:38 -040075```
Hao Zhu65216052017-09-04 13:01:29 -040076header-includes:
77 - \usepackage{booktabs}
78 - \usepackage{longtable}
79 - \usepackage{array}
80 - \usepackage{multirow}
81 - \usepackage[table]{xcolor}
82 - \usepackage{wrapfig}
83 - \usepackage{float}
84 - \usepackage{colortbl}
85 - \usepackage{pdflscape}
86 - \usepackage{tabu}
87 - \usepackage{threeparttable}
Hao Zhu5e4dd502018-04-05 12:01:58 -040088 - \usepackage{threeparttablex}
Hao Zhuef0c8302018-01-12 13:30:20 -050089 - \usepackage[normalem]{ulem}
Hao Zhu5e4dd502018-04-05 12:01:58 -040090 - \usepackage{makecell}
91
Hao Zhu65216052017-09-04 13:01:29 -040092```
93
Hao Zhu6a076462017-03-01 12:59:01 -050094## Plain LaTeX
95Plain LaTeX table looks relatively ugly in 2017.
96```{r}
Hao Zhu6a1cbb52017-10-24 15:54:50 -040097# As I said, you don't need format = "latex" if you have defined
98# knitr.table.format in options.
99kable(dt, format = "latex")
Hao Zhu6a076462017-03-01 12:59:01 -0500100```
101
Hao Zhu0a0e8332017-08-03 13:21:29 -0400102## LaTeX table with booktabs
Hao Zhu6a076462017-03-01 12:59:01 -0500103Similar with Bootstrap in HTML, in LaTeX, you can also use a trick to make your table look prettier as well. The different part is that, this time you don't need to pipe kable outputs to another function. Instead, you should call `booktabs = T` directly in `kable()`
104```{r}
Hao Zhu65216052017-09-04 13:01:29 -0400105kable(dt, format = "latex", booktabs = T)
Hao Zhu6a076462017-03-01 12:59:01 -0500106```
107
108# Table Styles
109`kable_styling` in LaTeX uses the same syntax and structure as `kable_styling` in HTML. However, instead of `bootstrap_options`, you should specify `latex_options` instead.
110
Hao Zhu0a0e8332017-08-03 13:21:29 -0400111## LaTeX options
Hao Zhu6a076462017-03-01 12:59:01 -0500112Similar with `bootstap_options`, `latex_options` is also a charter vector with a bunch of options including `striped`, `hold_position` and `scale_down`.
113
114### Striped
115Even though in the LaTeX world, people usually call it `alternative row colors` but here I'm using its bootstrap name for consistency. Note that to make it happen, LaTeX package `xcolor` is required to be loaded. In an environment like rmarkdown::pdf_document (rmarkdown 1.4.0 +), `kable_styling` will load it automatically if `striped` is enabled. However, in other cases, you probably need to import that package by yourself.
116```{r}
Hao Zhu65216052017-09-04 13:01:29 -0400117kable(dt, format = "latex", booktabs = T) %>%
Hao Zhu6a076462017-03-01 12:59:01 -0500118 kable_styling(latex_options = "striped")
119```
120
Hao Zhu0a0e8332017-08-03 13:21:29 -0400121### Hold position
Hao Zhuf03decd2017-09-13 10:45:44 -0400122If you provide a table caption in `kable()`, it will put your LaTeX tabular in a `table` environment, unless you are using `longtable`. A `table` environment will automatically find the best place (it thinks) to put your table. However, in many cases, you do want your table to appear in a position you want it to be. In this case, you can use this `hold_position` options here.
Hao Zhu6a076462017-03-01 12:59:01 -0500123```{r}
Hao Zhu65216052017-09-04 13:01:29 -0400124kable(dt, format = "latex", caption = "Demo table", booktabs = T) %>%
Hao Zhu6a076462017-03-01 12:59:01 -0500125 kable_styling(latex_options = c("striped", "hold_position"))
126```
127
Hao Zhuf03decd2017-09-13 10:45:44 -0400128If you find `hold_position` is not powerful enough to literally PIN your table in the exact position, you may want to use `HOLD_position`, which is a more powerful version of this feature. For those who are familar with LaTeX, `hold_position` uses `[!h]` and `HOLD_position` uses `[H]` and the `float` package.
129
Hao Zhu6a076462017-03-01 12:59:01 -0500130### Scale down
Hao Zhuf9aa4c42017-05-22 15:53:35 -0400131When you have a wide table that will normally go out of the page and you want to scale down the table to fit the page, you can use the `scale_down` option here. Note that, if your table is too small, it will also scale up your table. It was named in this way only because scaling up isn't very useful in most cases.
Hao Zhu6a076462017-03-01 12:59:01 -0500132```{r}
Hao Zhu65216052017-09-04 13:01:29 -0400133kable(cbind(dt, dt, dt), format = "latex", booktabs = T) %>%
Hao Zhu6a076462017-03-01 12:59:01 -0500134 kable_styling(latex_options = c("striped", "scale_down"))
135```
136```{r}
Hao Zhu65216052017-09-04 13:01:29 -0400137kable(cbind(dt), format = "latex", booktabs = T) %>%
Hao Zhu6a076462017-03-01 12:59:01 -0500138 kable_styling(latex_options = c("striped", "scale_down"))
139```
140
Hao Zhu0a0e8332017-08-03 13:21:29 -0400141### Repeat header in longtable
142In `kableExtra` 0.3.0 or above, a new option `repeat_header` was introduced into `kable_styling`. It will add header rows to longtables spanning multiple pages. For table captions on following pages, it will append *"continued"* to the caption to differentiate. If you need texts other than *"(continued)"* (for example, other languages), you can specify it using `kable_styling(..., repeat_header_text = "xxx")`. If you want to complete replace the table caption instead of appending, you can specify it in the option `repeat_header_method`.
Hao Zhu6ff9d502017-06-13 17:13:03 -0400143```{r}
144long_dt <- rbind(mtcars, mtcars)
145
Hao Zhu65216052017-09-04 13:01:29 -0400146kable(long_dt, format = "latex", longtable = T, booktabs = T, caption = "Longtable") %>%
Hao Zhu6ff9d502017-06-13 17:13:03 -0400147 add_header_above(c(" ", "Group 1" = 5, "Group 2" = 6)) %>%
148 kable_styling(latex_options = c("repeat_header"))
149```
150
Hao Zhu6a076462017-03-01 12:59:01 -0500151
Hao Zhu0a0e8332017-08-03 13:21:29 -0400152## Full width?
Hao Zhuf03decd2017-09-13 10:45:44 -0400153If you have a small table and you want it to spread wide on the page, you can try the `full_width` option. Unlike `scale_down`, it won't change your font size. You can use `column_spec`, which will be explained later, together with `full_width` to achieve the best result.
Hao Zhu6a076462017-03-01 12:59:01 -0500154```{r}
Hao Zhu65216052017-09-04 13:01:29 -0400155kable(dt, format = "latex", booktabs = T) %>%
Hao Zhuf03decd2017-09-13 10:45:44 -0400156 kable_styling(full_width = T) %>%
157 column_spec(1, width = "8cm")
Hao Zhu6a076462017-03-01 12:59:01 -0500158```
159
160## Position
161Table Position only matters when the table doesn't have `full_width`. You can choose to align the table to `center` or `left` side of the page. The default value of position is `center`.
162
163Note that even though you can select to `right` align your table but the table will actually be centered. Somehow it is very difficult to right align a table in LaTeX (since it's not very useful in the real world?). If you know how to do it, please send out an issue or PR and let me know.
164```{r}
Hao Zhu65216052017-09-04 13:01:29 -0400165kable(dt, format = "latex", booktabs = T) %>%
Hao Zhu6a076462017-03-01 12:59:01 -0500166 kable_styling(position = "center")
167```
168
169Becides these three common options, you can also wrap text around the table using the `float-left` or `float-right` options. Note that, like `striped`, this feature will load another non-default LaTeX package `wrapfig` which requires rmarkdown 1.4.0 +. If you rmarkdown version < 1.4.0, you need to load the package through a customed LaTeX template file.
170```{r}
Hao Zhu65216052017-09-04 13:01:29 -0400171kable(dt, format = "latex", booktabs = T) %>%
Hao Zhu6a076462017-03-01 12:59:01 -0500172 kable_styling(position = "float_right")
173```
174Lorem ipsum dolor sit amet, consectetur adipiscing elit. Cras sit amet mauris in ex ultricies elementum vel rutrum dolor. Phasellus tempor convallis dui, in hendrerit mauris placerat scelerisque. Maecenas a accumsan enim, a maximus velit. Pellentesque in risus eget est faucibus convallis nec at nulla. Phasellus nec lacinia justo. Morbi fermentum, orci id varius accumsan, nibh neque porttitor ipsum, consectetur luctus risus arcu ac ex. Aenean a luctus augue. Suspendisse et auctor nisl. Suspendisse cursus ultrices quam non vulputate. Phasellus et pharetra neque, vel feugiat erat. Sed feugiat elit at mauris commodo consequat. Sed congue lectus id mattis hendrerit. Mauris turpis nisl, congue eget velit sed, imperdiet convallis magna. Nam accumsan urna risus, non feugiat odio vehicula eget.
175
176## Font Size
177If one of your tables is huge and you want to use a smaller font size for that specific table, you can use the `font_size` option.
178```{r}
Hao Zhu65216052017-09-04 13:01:29 -0400179kable(dt, format = "latex", booktabs = T) %>%
Hao Zhu6a076462017-03-01 12:59:01 -0500180 kable_styling(font_size = 7)
181```
182
Hao Zhu0a0e8332017-08-03 13:21:29 -0400183# Column / Row Specification
184## Column spec
185When you have a table with lots of explanatory texts, you may want to specified the column width for different column, since the auto adjust in HTML may not work in its best way while basic LaTeX table is really bad at handling text wrapping. Also, sometimes, you may want to highlight a column (e.g. a "Total" column) by making it bold. In these scenario, you can use `column_spec()`. You can find an example below.
186```{r}
187text_tbl <- data.frame(
188 Items = c("Item 1", "Item 2", "Item 3"),
189 Features = c(
190 "Lorem ipsum dolor sit amet, consectetur adipiscing elit. Proin vehicula tempor ex. Morbi malesuada sagittis turpis, at venenatis nisl luctus a. ",
191 "In eu urna at magna luctus rhoncus quis in nisl. Fusce in velit varius, posuere risus et, cursus augue. Duis eleifend aliquam ante, a aliquet ex tincidunt in. ",
192 "Vivamus venenatis egestas eros ut tempus. Vivamus id est nisi. Aliquam molestie erat et sollicitudin venenatis. In ac lacus at velit scelerisque mattis. "
193 )
194)
195
Hao Zhu65216052017-09-04 13:01:29 -0400196kable(text_tbl, format = "latex", booktabs = T) %>%
Hao Zhu0a0e8332017-08-03 13:21:29 -0400197 kable_styling(full_width = F) %>%
Hao Zhua44e3752017-09-05 12:56:19 -0400198 column_spec(1, bold = T, color = "red") %>%
Hao Zhu0a0e8332017-08-03 13:21:29 -0400199 column_spec(2, width = "30em")
200```
201
202## Row spec
203Similar with `column_spec`, you can define specifications for rows. Currently, you can either bold or italiciz an entire row. Note that, similar with other row-related functions in `kableExtra`, for the position of the target row, you don't need to count in header rows or the group labelling rows.
204
205```{r}
Hao Zhu65216052017-09-04 13:01:29 -0400206kable(dt, format = "latex", booktabs = T) %>%
Hao Zhu0a0e8332017-08-03 13:21:29 -0400207 kable_styling("striped", full_width = F) %>%
Hao Zhuf70fba92017-09-07 17:53:40 -0400208 column_spec(7, border_left = T, bold = T) %>%
Hao Zhuef0c8302018-01-12 13:30:20 -0500209 row_spec(1, strikeout = T) %>%
Hao Zhuf03decd2017-09-13 10:45:44 -0400210 row_spec(3:5, bold = T, color = "white", background = "black")
Hao Zhu0a0e8332017-08-03 13:21:29 -0400211```
212
Hao Zhu6f362bb2017-10-23 23:21:38 -0400213## Header Rows
214One special case of `row_spec` is that you can specify the format of the header row via `row_spec(row = 0, ...)`.
215```{r}
216kable(dt, format = "latex", booktabs = T, align = "c") %>%
217 kable_styling(latex_options = "striped", full_width = F) %>%
218 row_spec(0, angle = 45)
219```
220
221
222
Hao Zhuce5ee412017-10-23 01:14:38 -0400223# Cell/Text Specification
224Function `cell_spec` is introduced in version 0.6.0 of `kableExtra`. Unlike `column_spec` and `row_spec`, **this function is designed to be used before the data.frame gets into the `kable` function**. Comparing with figuring out a list of 2 dimentional index for targeted cells, this design is way easier to learn and use and it fits perfectly well with `dplyr`'s `mutate` and `summarize` functions. With this design, there are two things to be noted:
225* Since `cell_spec` generates raw `HTML` or `LaTeX` code, make sure you remember to put `escape = FALSE` in `kable`. At the same time, you have to escape special symbols including `%` manually by yourself
226* `cell_spec` needs a way to know whether you want `html` or `latex`. You can specify it locally in function or globally via the `options(knitr.table.format = "latex")` method as suggested at the beginning. If you don't provide anything, this function will output as HTML by default.
227
228Currently, `cell_spec` supports features including bold, italic, monospace, text color, background color, align, font size & rotation angle. More features may be added in the future. Please see function documentations as reference.
229
230## Conditional logic
231It is very easy to use `cell_spec` with conditional logic. Here is an example.
Hao Zhu6f362bb2017-10-23 23:21:38 -0400232```{r, message=FALSE, warning=FALSE}
233library(dplyr)
Hao Zhuce5ee412017-10-23 01:14:38 -0400234mtcars[1:10, 1:2] %>%
235 mutate(
Hao Zhuce5ee412017-10-23 01:14:38 -0400236 car = row.names(.),
Hao Zhu6f362bb2017-10-23 23:21:38 -0400237 # You don't need format = "latex" if you have ever defined options(knitr.table.format)
238 mpg = cell_spec(mpg, "latex", color = ifelse(mpg > 20, "red", "blue")),
239 cyl = cell_spec(cyl, "latex", color = "white", align = "c", angle = 45,
Hao Zhuce5ee412017-10-23 01:14:38 -0400240 background = factor(cyl, c(4, 6, 8),
241 c("#666666", "#999999", "#BBBBBB")))
242 ) %>%
243 select(car, mpg, cyl) %>%
244 kable("latex", escape = F, booktabs = T, linesep = "")
245```
246
247## Visualize data with Viridis Color
Hao Zhu07305132017-10-24 15:41:49 -0400248This package also comes with a few helper functions, including `spec_color`, `spec_font_size` & `spec_angle`. These functions can rescale continuous variables to certain scales. For example, function `spec_color` would map a continuous variable to any [viridis color palettes](https://CRAN.R-project.org/package=viridisLite). It offers a very visually impactful representation in a tabular format.
Hao Zhuce5ee412017-10-23 01:14:38 -0400249
250```{r}
251iris[1:10, ] %>%
252 mutate_if(is.numeric, function(x) {
Hao Zhu6f362bb2017-10-23 23:21:38 -0400253 cell_spec(x, "latex", bold = T, color = spec_color(x, end = 0.9),
Hao Zhuce5ee412017-10-23 01:14:38 -0400254 font_size = spec_font_size(x))
255 }) %>%
256 mutate(Species = cell_spec(
Hao Zhu6f362bb2017-10-23 23:21:38 -0400257 Species, "latex", color = "white", bold = T,
Hao Zhuce5ee412017-10-23 01:14:38 -0400258 background = spec_color(1:10, end = 0.9, option = "A", direction = -1)
259 )) %>%
260 kable("latex", escape = F, booktabs = T, linesep = "", align = "c")
261```
262
263In the example above, I'm using the `mutate` functions from `dplyr`. You don't have to use it. Base R solutions like `iris$Species <- cell_spec(iris$Species, color = "red")` also works.
264
265## Text Specification
266If you check the results of `cell_spec`, you will find that this function does nothing more than wrapping the text with appropriate HTML/LaTeX formatting syntax. The result of this function is just a vector of character strings. As a result, when you are writing a `rmarkdown` document or write some text in shiny apps, if you need extra markups other than **bold** or *italic*, you may use this function to `r text_spec("color", color = "red")`, `r text_spec("change font size ", font_size = 16)` or `r text_spec("rotate", angle = 30)` your text.
267
Hao Zhu6f362bb2017-10-23 23:21:38 -0400268An aliased function `text_spec` is also provided for a more literal writing experience. The only difference is that in LaTeX, unless you specify `latex_background_in_cell = FALSE` (default is `TRUE`) in `cell_spec`, it will define cell background color as `\cellcolor{}`, which doesn't work outside of a table, while for `text_spec`, the default value for `latex_background_in_cell` is `FALSE`.
Hao Zhuce5ee412017-10-23 01:14:38 -0400269
270```{r}
271sometext <- strsplit(paste0(
Hao Zhu6290fdd2017-10-24 00:10:32 -0400272 "You can even try to make some crazy things like this paragraph. ",
Hao Zhu6a1cbb52017-10-24 15:54:50 -0400273 "It may seem like a useless feature right now but it's so cool ",
274 "and nobody can resist. ;)"
Hao Zhuce5ee412017-10-23 01:14:38 -0400275), " ")[[1]]
276text_formatted <- paste(
Hao Zhu6f362bb2017-10-23 23:21:38 -0400277 text_spec(sometext, "latex", color = spec_color(1:length(sometext), end = 0.9),
278 font_size = spec_font_size(1:length(sometext), begin = 5, end = 20)),
Hao Zhuce5ee412017-10-23 01:14:38 -0400279 collapse = " ")
280
281# To display the text, type `r text_formatted` outside of the chunk
282```
283`r text_formatted`
284
Hao Zhu0a0e8332017-08-03 13:21:29 -0400285# Grouped Columns / Rows
286## Add header rows to group columns
Hao Zhu6a076462017-03-01 12:59:01 -0500287Tables with multi-row headers can be very useful to demonstrate grouped data. To do that, you can pipe your kable object into `add_header_above()`. The header variable is supposed to be a named character with the names as new column names and values as column span. For your convenience, if column span equals to 1, you can ignore the `=1` part so the function below can be written as `add_header_above(c(" ", "Group 1" = 2, "Group 2" = 2, "Group 3" = 2)).
288```{r}
Hao Zhu65216052017-09-04 13:01:29 -0400289kable(dt, format = "latex", booktabs = T) %>%
Hao Zhu6a076462017-03-01 12:59:01 -0500290 kable_styling() %>%
291 add_header_above(c(" " = 1, "Group 1" = 2, "Group 2" = 2, "Group 3" = 2))
292```
293
Hao Zhuce5ee412017-10-23 01:14:38 -0400294In fact, if you want to add another row of header on top, please feel free to do so. Also, since kableExtra 0.3.0, you can specify `bold` & `italic` as you do in `row_spec()`.
Hao Zhu6a076462017-03-01 12:59:01 -0500295```{r}
Hao Zhu65216052017-09-04 13:01:29 -0400296kable(dt, format = "latex", booktabs = T) %>%
Hao Zhu00ba87c2017-08-01 12:42:58 -0400297 kable_styling(latex_options = "striped") %>%
Hao Zhu6a076462017-03-01 12:59:01 -0500298 add_header_above(c(" ", "Group 1" = 2, "Group 2" = 2, "Group 3" = 2)) %>%
299 add_header_above(c(" ", "Group 4" = 4, "Group 5" = 2)) %>%
Hao Zhu916c3662017-06-21 15:55:05 -0400300 add_header_above(c(" ", "Group 6" = 6), bold = T, italic = T)
Hao Zhu6a076462017-03-01 12:59:01 -0500301```
302
Hao Zhu0a0e8332017-08-03 13:21:29 -0400303## Group rows via labeling
304Sometimes we want a few rows of the table being grouped together. They might be items under the same topic (e.g., animals in one species) or just different data groups for a categorical variable (e.g., age < 40, age > 40). With the new function `group_rows()` in `kableExtra`, this kind of task can be completed in one line. Please see the example below. Note that when you count for the start/end rows of the group, you don't need to count for the header rows nor other group label rows. You only need to think about the row numbers in the "original R dataframe".
305```{r}
Hao Zhu65216052017-09-04 13:01:29 -0400306kable(mtcars[1:10, 1:6], format = "latex", caption = "Group Rows", booktabs = T) %>%
Hao Zhu0a0e8332017-08-03 13:21:29 -0400307 kable_styling() %>%
308 group_rows("Group 1", 4, 7) %>%
309 group_rows("Group 2", 8, 10)
310```
311
312In case some users need it, you can define your own gapping spaces between the group labeling row and previous rows. The default value is `0.5em`.
313```{r}
Hao Zhu65216052017-09-04 13:01:29 -0400314kable(dt, format = "latex", booktabs = T) %>%
Hao Zhu0a0e8332017-08-03 13:21:29 -0400315 group_rows("Group 1", 4, 5, latex_gap_space = "2em")
316```
317
Hao Zhuf03decd2017-09-13 10:45:44 -0400318If you prefer to build multiple groups in one step, you can use the short-hand `index` option. Basically, you can use it in the same way as you use `add_header_above`. However, since `group_row` only support one layer of grouping, you can't add multiple layers of grouping header as you can do in `add_header_above`.
319```{r, eval=FALSE}
320kable(mtcars[1:10, 1:6], format = "latex", caption = "Group Rows", booktabs = T) %>%
321 kable_styling() %>%
322 group_rows(index=c(" " = 3, "Group 1" = 4, "Group 2" = 3))
323# Not evaluated. The code above should have the same result as the first example in this section.
324```
325
Hao Zhu23bde3a2018-03-28 16:00:55 -0400326Note that `kable` has a relatively special feature to handle `align` and it may bring troubles to you if you are not using it correctly. In the documentation of the `align` argument of `kable`, it says:
327
328> If `length(align) == 1L`, the string will be expanded to a vector of individual letters, e.g. `'clc'` becomes `c('c', 'l', 'c')`, **unless the output format is LaTeX**.
329
330For example,
331```{r, eval=F}
332kable(mtcars[1:2, 1:2], "latex", align = c("cl"))
333# \begin{tabular}{l|cl|cl} # Note the column alignment here
334# \hline
335# & mpg & cyl\\
336# ...
337```
338
339LaTeX, somehow shows surprisingly high tolerance on that, which is quite unusual. As a result, it won't throw an error if you are just using `kable` to make some simple tables. However, when you use `kableExtra` to make some advanced modification, it will start to throw some bugs. As a result, please try to form a habbit of using a vector in the `align` argument for `kable` (tip: you can use `rep` function to replicate elements. For example, `c("c", rep("l", 10))`).
340
Hao Zhu0a0e8332017-08-03 13:21:29 -0400341## Row indentation
342Unlike `group_rows()`, which will insert a labeling row, sometimes we want to list a few sub groups under a total one. In that case, `add_indent()` is probably more apporiate.
343For advanced users, you can even define your own css for the group labeling.
344```{r}
Hao Zhu65216052017-09-04 13:01:29 -0400345kable(dt, format = "latex", booktabs = T) %>%
Hao Zhu0a0e8332017-08-03 13:21:29 -0400346 add_indent(c(1, 3, 5))
347```
348
349## Group rows via multi-row cell
Hao Zhu12b0ade2018-01-13 16:19:58 -0500350Function `group_rows` is great for showing simple structural information on rows but sometimes people may need to show structural information with multiple layers. When it happens, you may consider to use `collapse_rows` instead, which will put repeating cells in columns into multi-row cells.
351
352In LaTeX, `collapse_rows` adds some extra hlines to help differentiate groups. You can customize this behavior using the `latex_hline` argument. You can choose from `full` (default), `major` and `none`.
Hao Zhu0a0e8332017-08-03 13:21:29 -0400353
354```{r}
355collapse_rows_dt <- data.frame(C1 = c(rep("a", 10), rep("b", 5)),
356 C2 = c(rep("c", 7), rep("d", 3), rep("c", 2), rep("d", 3)),
357 C3 = 1:15,
358 C4 = sample(c(0,1), 15, replace = TRUE))
Hao Zhu65216052017-09-04 13:01:29 -0400359kable(collapse_rows_dt, format = "latex", booktabs = T, align = "c") %>%
Hao Zhu0a0e8332017-08-03 13:21:29 -0400360 column_spec(1, bold=T) %>%
Hao Zhu12b0ade2018-01-13 16:19:58 -0500361 collapse_rows(columns = 1:2, latex_hline = "major")
Hao Zhu0a0e8332017-08-03 13:21:29 -0400362```
363
364```{r}
Hao Zhu65216052017-09-04 13:01:29 -0400365kable(collapse_rows_dt, format = "latex", align = "c") %>%
Hao Zhu0a0e8332017-08-03 13:21:29 -0400366 column_spec(1, bold = T, width = "5em") %>%
367 collapse_rows(1:2)
368```
369
Hao Zhu778b70a2018-04-02 12:21:17 -0400370When there are too many layers, sometimes the table can become too wide. You can choose to stack the first few layers by setting `row_group_label_position` to `stack`.
Hao Zhu23bde3a2018-03-28 16:00:55 -0400371
372
Hao Zhu778b70a2018-04-02 12:21:17 -0400373```{r}
374collapse_rows_dt <- expand.grid(
375 Country = sprintf('Country with a long name %s', c('A', 'B')),
376 State = sprintf('State %s', c('a', 'b')),
377 City = sprintf('City %s', c('1', '2')),
378 District = sprintf('District %s', c('1', '2'))
379) %>% arrange(Country, State, City) %>%
380 mutate_all(as.character) %>%
381 mutate(C1 = rnorm(n()),
382 C2 = rnorm(n()))
383
384kable(collapse_rows_dt, format = "latex",
385 booktabs = T, align = "c", linesep = '') %>%
386 collapse_rows(1:3, row_group_label_position = 'stack')
387```
388
389To better distinguish different layers, you can format the each layer using `row_group_label_fonts`. You can also customize the hlines to better differentiate groups.
390
391```{r}
392row_group_label_fonts <- list(
393 list(bold = T, italic = T),
394 list(bold = F, italic = F)
395 )
396kable(collapse_rows_dt, format = "latex",
397 booktabs = T, align = "c", linesep = '') %>%
398 column_spec(1, bold=T) %>%
399 collapse_rows(1:3, latex_hline = 'custom', custom_latex_hline = 1:3,
400 row_group_label_position = 'stack',
401 row_group_label_fonts = row_group_label_fonts)
402```
403
Hao Zhu0a0e8332017-08-03 13:21:29 -0400404# Table Footnote
Hao Zhu6a076462017-03-01 12:59:01 -0500405
Hao Zhu4f8eaa22018-01-11 16:14:25 -0500406> Now it's recommended to use the new `footnote` function instead of `add_footnote` to make table footnotes.
407
408Documentations for `add_footnote` can be found [here](http://haozhu233.github.io/kableExtra/legacy_features#add_footnote).
409
410There are four notation systems in `footnote`, namely `general`, `number`, `alphabet` and `symbol`. The last three types of footnotes will be labeled with corresponding marks while `general` won't be labeled. You can pick any one of these systems or choose to display them all for fulfill the APA table footnotes requirements.
Hao Zhu6a076462017-03-01 12:59:01 -0500411```{r}
Hao Zhu4f8eaa22018-01-11 16:14:25 -0500412kable(dt, "latex", align = "c") %>%
413 kable_styling(full_width = F) %>%
414 footnote(general = "Here is a general comments of the table. ",
415 number = c("Footnote 1; ", "Footnote 2; "),
416 alphabet = c("Footnote A; ", "Footnote B; "),
417 symbol = c("Footnote Symbol 1; ", "Footnote Symbol 2")
418 )
Hao Zhu6a076462017-03-01 12:59:01 -0500419```
420
Hao Zhu4f8eaa22018-01-11 16:14:25 -0500421You can also specify title for each category by using the `***_title` arguments. Default value for `general_title` is "Note: " and "" for the rest three. You can also change the order using `footnote_order`. You can even display footnote as chunk texts (default is as a list) using `footnote_as_chunk`.
422
Hao Zhu6a076462017-03-01 12:59:01 -0500423```{r}
Hao Zhu4f8eaa22018-01-11 16:14:25 -0500424kable(dt, "latex", align = "c", booktabs = T) %>%
425 footnote(general = "Here is a general comments of the table. ",
426 number = c("Footnote 1; ", "Footnote 2; "),
427 alphabet = c("Footnote A; ", "Footnote B; "),
428 symbol = c("Footnote Symbol 1; ", "Footnote Symbol 2"),
429 general_title = "General: ", number_title = "Type I: ",
430 alphabet_title = "Type II: ", symbol_title = "Type III: ",
431 footnote_as_chunk = T
432 )
Hao Zhu6a076462017-03-01 12:59:01 -0500433```
434
Hao Zhu4f8eaa22018-01-11 16:14:25 -0500435If you need to add footnote marks in table, you need to do it manually (no fancy) using `footnote_mark_***()`. Remember that similar with `cell_spec`, you need to tell this function whether you want it to do it in `HTML` (default) or `LaTeX`. You can set it for all using the `knitr.table.format` global option. ALso, if you have ever use `footnote_mark_***()`, you need to put `escape = F` in your `kable` function to avoid escaping of special characters.
Hao Zhu6a076462017-03-01 12:59:01 -0500436
Hao Zhu6a076462017-03-01 12:59:01 -0500437```{r}
Hao Zhu4f8eaa22018-01-11 16:14:25 -0500438dt_footnote <- dt
439names(dt_footnote)[2] <- paste0(names(dt_footnote)[2],
440 # That "latex" can be eliminated if defined in global
441 footnote_marker_symbol(1, "latex"))
442row.names(dt_footnote)[4] <- paste0(row.names(dt_footnote)[4],
443 footnote_marker_alphabet(1))
444kable(dt_footnote, "latex", align = "c", booktabs = T,
445 # Remember this escape = F
446 escape = F) %>%
447 footnote(alphabet = "Footnote A; ",
448 symbol = "Footnote Symbol 1; ",
449 alphabet_title = "Type II: ", symbol_title = "Type III: ",
450 footnote_as_chunk = T)
Hao Zhu6a076462017-03-01 12:59:01 -0500451```
Hao Zhuf9aa4c42017-05-22 15:53:35 -0400452
Hao Zhu23bde3a2018-03-28 16:00:55 -0400453If your table footnote is very long, please consider to put your table in a `ThreePartTable` frame. Note that, in kableExtra version <= 0.7.0, we were using `threeparttable` but since kableExtra 0.8.0, we start to use `ThreePartTable` from `threeparttablex` instead. `ThreePartTable` supports both the `longtable` and `tabu` environments.
454
455```{r}
456kable(dt, "latex", align = "c", booktabs = T, caption = "s") %>%
457 footnote(general = "Here is a very very very very very very very very very very very very very very very very very very very very long footnote",
458 threeparttable = T)
459```
460
Hao Zhu0a0e8332017-08-03 13:21:29 -0400461# LaTeX Only Features
Hao Zhu5e4dd502018-04-05 12:01:58 -0400462## Linebreak processor
463Unlike in HTML, where you can use `<br>` at any time, in LaTeX, it's actually quite difficult to make a linebreak in a table. Therefore I created the `linebreak` function to faciliate this process. Please see the [Best Practice for Newline in LaTeX Table](http://haozhu233.github.io/kableExtra/best_practice_for_newline_in_latex_table.pdf) for details.
464
465```{r}
466dt_lb <- data.frame(
467 Item = c("Hello\nWorld", "This\nis a cat"),
468 Value = c(10, 100)
469)
470
471dt_lb %>%
472 mutate_all(linebreak) %>%
473 kable("latex", booktabs = T, escape = F,
474 col.names = linebreak(c("Item\n(Name)", "Value\n(Number)"), align = "c"))
475```
476
477At the same time, since `kableExtra 0.8.0`, all `kableExtra` functions that have some contents input (such as `footnote` or `group_rows`) will automatically convert `\n` to linebreaks for you in both LaTeX and HTML.
478
479
Hao Zhu0a0e8332017-08-03 13:21:29 -0400480## Table on a Landscape Page
Hao Zhu4278c632017-05-24 01:02:50 -0400481Sometimes when we have a wide table, we want it to sit on a designated landscape page. The new function `landscape()` can help you on that. Unlike other functions, this little function only serves LaTeX and doesn't have a HTML side.
482```{r}
Hao Zhu65216052017-09-04 13:01:29 -0400483kable(dt, format = "latex", caption = "Demo Table (Landscape)[note]", booktabs = T) %>%
Hao Zhu4278c632017-05-24 01:02:50 -0400484 kable_styling(latex_options = c("hold_position")) %>%
485 add_header_above(c(" ", "Group 1[note]" = 3, "Group 2[note]" = 3)) %>%
486 add_footnote(c("This table is from mtcars",
487 "Group 1 contains mpg, cyl and disp",
488 "Group 2 contains hp, drat and wt"),
489 notation = "symbol") %>%
490 group_rows("Group 1", 4, 5) %>%
491 landscape()
492```
Hao Zhu4840bc92017-09-15 15:55:05 -0400493
494## Use LaTeX table in HTML or Word
Hao Zhu5e4dd502018-04-05 12:01:58 -0400495If you want to include a LaTeX rendered table in your HTML or Word document, or if you just want to save table as an image, you may consider to use `kable_as_image()`. Note that this feature requires you to have [magick](https://github.com/ropensci/magick) installed (`install.packages("magick")`). Also, if you are planning to use it on Windows, you need to install [Ghostscript](https://www.ghostscript.com/). This feature may not work if you are using tinytex. If you are using tinytex, please consider using other alternatives of this function.
Hao Zhu4840bc92017-09-15 15:55:05 -0400496
497```{r, eval = F}
498# Not evaluated.
499
500# The code below will automatically include the image in the rmarkdown document
501kable(dt, "latex", booktabs = T) %>%
502 column_spec(1, bold = T) %>%
503 kable_as_image()
504
505# If you want to save the image locally, just provide a name
506kable(dt, "latex", booktabs = T) %>%
507 column_spec(1, bold = T) %>%
508 kable_as_image("my_latex_table")
509```