Hao Zhu | 62cdde5 | 2017-05-20 22:16:03 -0400 | [diff] [blame] | 1 | #' Put a few rows of a table into one category |
| 2 | #' |
Hao Zhu | bd95bb2 | 2017-05-22 16:08:49 -0400 | [diff] [blame] | 3 | #' @description Group a few rows in a table together under a label. |
| 4 | #' |
| 5 | #' @param kable_input Output of `knitr::kable()` with `format` specified |
| 6 | #' @param group_label A character string for the name of the group |
| 7 | #' @param start_row A numeric value that tells the function in which row the |
| 8 | #' group starts. Note that the counting excludes header rows and other group |
| 9 | #' labeling rows |
| 10 | #' @param end_row A numeric value that tells the function in which row the group |
| 11 | #' ends. |
Hao Zhu | 49483bf | 2017-09-12 11:21:00 -0400 | [diff] [blame] | 12 | #' @param index A named vector providing the index for robust row-grouping tasks. |
| 13 | #' Basically, you can use it in the same way as `add_header_above()`. |
Hao Zhu | bd95bb2 | 2017-05-22 16:08:49 -0400 | [diff] [blame] | 14 | #' @param label_row_css A character string for any customized css used for the |
| 15 | #' labeling row. By default, the labeling row will have a solid black line |
| 16 | #' underneath. Only useful for HTML documents. |
| 17 | #' @param latex_gap_space A character value telling LaTeX how large the gap |
| 18 | #' between the previous row and the group labeling row. Only useful for LaTeX |
| 19 | #' documents. |
Hao Zhu | ac7e70f | 2017-08-02 00:18:36 -0400 | [diff] [blame] | 20 | #' @param escape A T/F value showing whether special characters should be |
| 21 | #' escaped. |
Salzer | 8f49eb6 | 2018-02-12 22:19:06 -0500 | [diff] [blame^] | 22 | #' @param latex_align Adjust justification of group_label in latex only. Value should be "c" for |
Salzer | 1555085 | 2018-02-12 22:09:14 -0500 | [diff] [blame] | 23 | #' centered on row, "r" for right justification, or "l" for left justification. Default |
| 24 | #' Value is "l" If using html, the alignment can be set by using the label_row_css |
| 25 | #' parameter. |
bsalzer | 8593327 | 2018-02-12 17:26:46 -0500 | [diff] [blame] | 26 | #' @param colnum A numeric that determines how many columns the text should span. |
| 27 | #' The default setting will have the text span the entire length. |
Hao Zhu | bd95bb2 | 2017-05-22 16:08:49 -0400 | [diff] [blame] | 28 | #' |
Hao Zhu | 78e6122 | 2017-05-24 20:53:35 -0400 | [diff] [blame] | 29 | #' @examples x <- knitr::kable(head(mtcars), "html") |
| 30 | #' # Put Row 2 to Row 5 into a Group and label it as "Group A" |
| 31 | #' group_rows(x, "Group A", 2, 5) |
| 32 | #' |
Hao Zhu | 62cdde5 | 2017-05-20 22:16:03 -0400 | [diff] [blame] | 33 | #' @export |
Hao Zhu | 49483bf | 2017-09-12 11:21:00 -0400 | [diff] [blame] | 34 | group_rows <- function(kable_input, group_label = NULL, |
| 35 | start_row = NULL, end_row = NULL, |
| 36 | index = NULL, |
Hao Zhu | d972e7f | 2017-05-22 13:27:15 -0400 | [diff] [blame] | 37 | label_row_css = "border-bottom: 1px solid;", |
Hao Zhu | 49483bf | 2017-09-12 11:21:00 -0400 | [diff] [blame] | 38 | latex_gap_space = "0.3em", |
Salzer | 8f49eb6 | 2018-02-12 22:19:06 -0500 | [diff] [blame^] | 39 | escape = TRUE, latex_align = "l", colnum = NULL) { |
Hao Zhu | 49483bf | 2017-09-12 11:21:00 -0400 | [diff] [blame] | 40 | |
Hao Zhu | 62cdde5 | 2017-05-20 22:16:03 -0400 | [diff] [blame] | 41 | kable_format <- attr(kable_input, "format") |
| 42 | if (!kable_format %in% c("html", "latex")) { |
Hao Zhu | 401ebd8 | 2018-01-14 17:10:20 -0500 | [diff] [blame] | 43 | warning("Please specify format in kable. kableExtra can customize either ", |
| 44 | "HTML or LaTeX outputs. See https://haozhu233.github.io/kableExtra/ ", |
| 45 | "for details.") |
Hao Zhu | 62cdde5 | 2017-05-20 22:16:03 -0400 | [diff] [blame] | 46 | return(kable_input) |
| 47 | } |
Hao Zhu | 49483bf | 2017-09-12 11:21:00 -0400 | [diff] [blame] | 48 | if (is.null(index)) { |
| 49 | if (kable_format == "html") { |
Salzer | 8f49eb6 | 2018-02-12 22:19:06 -0500 | [diff] [blame^] | 50 | if(!missing(latex_align)) warning("latex_align parameter is not used in HTML Mode, |
Salzer | 1555085 | 2018-02-12 22:09:14 -0500 | [diff] [blame] | 51 | use label_row_css instead.") |
Hao Zhu | 49483bf | 2017-09-12 11:21:00 -0400 | [diff] [blame] | 52 | return(group_rows_html(kable_input, group_label, start_row, end_row, |
bsalzer | 8593327 | 2018-02-12 17:26:46 -0500 | [diff] [blame] | 53 | label_row_css, escape, colnum)) |
Hao Zhu | 49483bf | 2017-09-12 11:21:00 -0400 | [diff] [blame] | 54 | } |
| 55 | if (kable_format == "latex") { |
| 56 | return(group_rows_latex(kable_input, group_label, start_row, end_row, |
Salzer | 8f49eb6 | 2018-02-12 22:19:06 -0500 | [diff] [blame^] | 57 | latex_gap_space, escape, latex_align, colnum)) |
Hao Zhu | 49483bf | 2017-09-12 11:21:00 -0400 | [diff] [blame] | 58 | } |
| 59 | } else { |
| 60 | index <- group_row_index_translator(index) |
| 61 | out <- kable_input |
| 62 | if (kable_format == "html") { |
| 63 | for (i in 1:nrow(index)) { |
Salzer | 8f49eb6 | 2018-02-12 22:19:06 -0500 | [diff] [blame^] | 64 | if(!missing(latex_align)) warning("latex_align parameter is not used in HTML Mode, |
Salzer | 1555085 | 2018-02-12 22:09:14 -0500 | [diff] [blame] | 65 | use label_row_css instead.") |
Hao Zhu | 49483bf | 2017-09-12 11:21:00 -0400 | [diff] [blame] | 66 | out <- group_rows_html(out, index$header[i], |
| 67 | index$start[i], index$end[i], |
bsalzer | 8593327 | 2018-02-12 17:26:46 -0500 | [diff] [blame] | 68 | label_row_css, escape, colnum) |
Hao Zhu | 49483bf | 2017-09-12 11:21:00 -0400 | [diff] [blame] | 69 | } |
| 70 | } |
| 71 | if (kable_format == "latex") { |
| 72 | for (i in 1:nrow(index)) { |
| 73 | out <- group_rows_latex(out, index$header[i], |
| 74 | index$start[i], index$end[i], |
Salzer | 8f49eb6 | 2018-02-12 22:19:06 -0500 | [diff] [blame^] | 75 | latex_gap_space, escape, latex_align, colnum) |
Hao Zhu | 49483bf | 2017-09-12 11:21:00 -0400 | [diff] [blame] | 76 | } |
| 77 | } |
| 78 | return(out) |
Hao Zhu | 62cdde5 | 2017-05-20 22:16:03 -0400 | [diff] [blame] | 79 | } |
Hao Zhu | 49483bf | 2017-09-12 11:21:00 -0400 | [diff] [blame] | 80 | } |
| 81 | |
| 82 | group_row_index_translator <- function(index) { |
| 83 | index <- standardize_header_input(index) |
| 84 | index$start <- cumsum(c(1, index$colspan))[1:length(index$colspan)] |
| 85 | index$end <- cumsum(index$colspan) |
| 86 | index$header <- trimws(index$header) |
| 87 | index <- index[index$header != "", ] |
| 88 | return(index) |
Hao Zhu | 62cdde5 | 2017-05-20 22:16:03 -0400 | [diff] [blame] | 89 | } |
| 90 | |
Hao Zhu | d972e7f | 2017-05-22 13:27:15 -0400 | [diff] [blame] | 91 | group_rows_html <- function(kable_input, group_label, start_row, end_row, |
bsalzer | 8593327 | 2018-02-12 17:26:46 -0500 | [diff] [blame] | 92 | label_row_css, escape, colnum) { |
Hao Zhu | 62cdde5 | 2017-05-20 22:16:03 -0400 | [diff] [blame] | 93 | kable_attrs <- attributes(kable_input) |
Hao Zhu | 558c72f | 2017-07-24 15:12:00 -0400 | [diff] [blame] | 94 | kable_xml <- read_kable_as_xml(kable_input) |
Hao Zhu | 62cdde5 | 2017-05-20 22:16:03 -0400 | [diff] [blame] | 95 | kable_tbody <- xml_tpart(kable_xml, "tbody") |
| 96 | |
Hao Zhu | ac7e70f | 2017-08-02 00:18:36 -0400 | [diff] [blame] | 97 | if (escape) { |
| 98 | group_label <- escape_html(group_label) |
| 99 | } |
| 100 | |
Hao Zhu | 62cdde5 | 2017-05-20 22:16:03 -0400 | [diff] [blame] | 101 | group_header_rows <- attr(kable_input, "group_header_rows") |
| 102 | group_seq <- seq(start_row, end_row) |
| 103 | if (!is.null(group_header_rows)) { |
| 104 | group_seq <- positions_corrector(group_seq, group_header_rows, |
| 105 | length(xml_children(kable_tbody))) |
| 106 | } |
| 107 | |
| 108 | # Insert a group header row |
| 109 | starting_node <- xml_child(kable_tbody, group_seq[1]) |
bsalzer | 8593327 | 2018-02-12 17:26:46 -0500 | [diff] [blame] | 110 | kable_ncol <- ifelse(is.null(colnum), |
| 111 | length(xml_children(starting_node)), |
| 112 | colnum) |
Hao Zhu | 62cdde5 | 2017-05-20 22:16:03 -0400 | [diff] [blame] | 113 | group_header_row_text <- paste0( |
Hao Zhu | d972e7f | 2017-05-22 13:27:15 -0400 | [diff] [blame] | 114 | '<tr groupLength="', length(group_seq), '"><td colspan="', kable_ncol, |
| 115 | '" style="', label_row_css, '"><strong>', group_label, |
| 116 | "</strong></td></tr>" |
Hao Zhu | 62cdde5 | 2017-05-20 22:16:03 -0400 | [diff] [blame] | 117 | ) |
| 118 | group_header_row <- read_xml(group_header_row_text, options = "COMPACT") |
| 119 | xml_add_sibling(starting_node, group_header_row, .where = "before") |
| 120 | |
| 121 | # add indentations to items |
Hao Zhu | f2dfd14 | 2017-07-24 14:43:28 -0400 | [diff] [blame] | 122 | out <- as_kable_xml(kable_xml) |
Hao Zhu | 62cdde5 | 2017-05-20 22:16:03 -0400 | [diff] [blame] | 123 | attributes(out) <- kable_attrs |
| 124 | attr(out, "group_header_rows") <- c(attr(out, "group_header_rows"), group_seq[1]) |
Hao Zhu | 49483bf | 2017-09-12 11:21:00 -0400 | [diff] [blame] | 125 | out <- add_indent_html(out, positions = seq(start_row, end_row)) |
Hao Zhu | 62cdde5 | 2017-05-20 22:16:03 -0400 | [diff] [blame] | 126 | return(out) |
| 127 | } |
Hao Zhu | d972e7f | 2017-05-22 13:27:15 -0400 | [diff] [blame] | 128 | |
Hao Zhu | fc14c9b | 2017-05-22 14:03:22 -0400 | [diff] [blame] | 129 | group_rows_latex <- function(kable_input, group_label, start_row, end_row, |
Salzer | 8f49eb6 | 2018-02-12 22:19:06 -0500 | [diff] [blame^] | 130 | gap_space, escape, latex_align, colnum) { |
Hao Zhu | d972e7f | 2017-05-22 13:27:15 -0400 | [diff] [blame] | 131 | table_info <- magic_mirror(kable_input) |
Hao Zhu | d2c0f73 | 2017-08-26 10:40:14 -0400 | [diff] [blame] | 132 | out <- enc2utf8(as.character(kable_input)) |
Hao Zhu | d972e7f | 2017-05-22 13:27:15 -0400 | [diff] [blame] | 133 | |
Hao Zhu | 064990d | 2017-10-17 18:08:42 -0400 | [diff] [blame] | 134 | if (table_info$duplicated_rows) { |
| 135 | dup_fx_out <- fix_duplicated_rows_latex(out, table_info) |
| 136 | out <- dup_fx_out[[1]] |
| 137 | table_info <- dup_fx_out[[2]] |
| 138 | } |
| 139 | |
Hao Zhu | ac7e70f | 2017-08-02 00:18:36 -0400 | [diff] [blame] | 140 | if (escape) { |
| 141 | group_label <- escape_latex(group_label) |
| 142 | group_label <- gsub("\\\\", "\\\\\\\\", group_label) |
| 143 | } |
| 144 | |
Hao Zhu | d972e7f | 2017-05-22 13:27:15 -0400 | [diff] [blame] | 145 | # Add group label |
| 146 | rowtext <- table_info$contents[start_row + 1] |
| 147 | if (table_info$booktabs) { |
| 148 | new_rowtext <- paste0( |
| 149 | "\\\\addlinespace[", gap_space, "]\n", |
bsalzer | 8593327 | 2018-02-12 17:26:46 -0500 | [diff] [blame] | 150 | "\\\\multicolumn{", ifelse(is.null(colnum), |
| 151 | table_info$ncol, |
| 152 | colnum), |
Salzer | 8f49eb6 | 2018-02-12 22:19:06 -0500 | [diff] [blame^] | 153 | "}{", latex_align, "}{\\\\textbf{", group_label, |
Hao Zhu | d972e7f | 2017-05-22 13:27:15 -0400 | [diff] [blame] | 154 | "}}\\\\\\\\\n", |
| 155 | rowtext |
| 156 | ) |
Hao Zhu | d972e7f | 2017-05-22 13:27:15 -0400 | [diff] [blame] | 157 | } else { |
| 158 | rowtext <- paste0("\\\\hline\n", rowtext) |
| 159 | new_rowtext <- paste0( |
Salzer | 8f49eb6 | 2018-02-12 22:19:06 -0500 | [diff] [blame^] | 160 | "\\\\hline\n\\\\multicolumn{", table_info$ncol, "}{", latex_align,"}{\\\\textbf{", |
Hao Zhu | d972e7f | 2017-05-22 13:27:15 -0400 | [diff] [blame] | 161 | group_label, "}}\\\\\\\\\n", rowtext |
| 162 | ) |
| 163 | } |
| 164 | out <- sub(rowtext, new_rowtext, out) |
Hao Zhu | 8f20299 | 2017-07-15 02:20:18 -0400 | [diff] [blame] | 165 | out <- gsub("\\\\addlinespace\n", "", out) |
Hao Zhu | d2c0f73 | 2017-08-26 10:40:14 -0400 | [diff] [blame] | 166 | out <- structure(out, format = "latex", class = "knitr_kable") |
Hao Zhu | 32f43f7 | 2017-06-20 18:24:54 -0400 | [diff] [blame] | 167 | table_info$group_rows_used <- TRUE |
| 168 | attr(out, "kable_meta") <- table_info |
Hao Zhu | 49483bf | 2017-09-12 11:21:00 -0400 | [diff] [blame] | 169 | out <- add_indent_latex(out, seq(start_row, end_row)) |
Hao Zhu | d972e7f | 2017-05-22 13:27:15 -0400 | [diff] [blame] | 170 | return(out) |
| 171 | } |