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Hao Zhuc859dba2018-10-03 18:05:55 -0400[diff] [blame]8 <title>Using kableExtra in Bookdown</title>
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Hao Zhu5250ab52018-10-23 15:25:14 -0400[diff] [blame]28<meta name="date" content="2018-10-23">
Hao Zhuc1450882018-10-03 17:56:26 -0400[diff] [blame]29
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130
131<ul class="summary">
132<li class="chapter" data-level="1" data-path="index.html"><a href="index.html"><i class="fa fa-check"></i><b>1</b> Introduction</a></li>
133<li class="chapter" data-level="2" data-path="cross-format-tables-in-bookdown.html"><a href="cross-format-tables-in-bookdown.html"><i class="fa fa-check"></i><b>2</b> Cross-format Tables in Bookdown</a><ul>
134<li class="chapter" data-level="2.1" data-path="cross-format-tables-in-bookdown.html"><a href="cross-format-tables-in-bookdown.html#use-the-k-m-approach-instead-of-m-k"><i class="fa fa-check"></i><b>2.1</b> Use the “K-M” approach instead of “M-K”</a></li>
Hao Zhu5250ab52018-10-23 15:25:14 -0400[diff] [blame]135<li class="chapter" data-level="2.2" data-path="cross-format-tables-in-bookdown.html"><a href="cross-format-tables-in-bookdown.html#prepare-your-tables-for-all-formats"><i class="fa fa-check"></i><b>2.2</b> Prepare Your Tables for All Formats</a></li>
Hao Zhuc1450882018-10-03 17:56:26 -0400[diff] [blame]136</ul></li>
137<li class="chapter" data-level="3" data-path="use-bootstrap-tables-in-gitbooks-epub.html"><a href="use-bootstrap-tables-in-gitbooks-epub.html"><i class="fa fa-check"></i><b>3</b> Use Bootstrap Tables in gitbooks &amp; epub</a><ul>
138<li class="chapter" data-level="3.1" data-path="use-bootstrap-tables-in-gitbooks-epub.html"><a href="use-bootstrap-tables-in-gitbooks-epub.html#gitbook"><i class="fa fa-check"></i><b>3.1</b> Gitbook</a></li>
139<li class="chapter" data-level="3.2" data-path="use-bootstrap-tables-in-gitbooks-epub.html"><a href="use-bootstrap-tables-in-gitbooks-epub.html#epub"><i class="fa fa-check"></i><b>3.2</b> Epub</a></li>
140</ul></li>
141</ul>
142
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149 <h1>
Hao Zhuc859dba2018-10-03 18:05:55 -0400[diff] [blame]150 <i class="fa fa-circle-o-notch fa-spin"></i><a href="./">Using kableExtra in Bookdown</a>
Hao Zhuc1450882018-10-03 17:56:26 -0400[diff] [blame]151 </h1>
152 </div>
153
154 <div class="page-wrapper" tabindex="-1" role="main">
155 <div class="page-inner">
156
157 <section class="normal" id="section-">
158<div id="cross-format-tables-in-bookdown" class="section level1">
159<h1><span class="header-section-number">Chapter 2</span> Cross-format Tables in Bookdown</h1>
160<blockquote>
161<p>Note that if kableExtra 0.9.0 doesn’t support the EPUB format. If you need to output tables in <code>.epub</code>, please upgrade to the dev version or version 1.0 on CRAN once it’s released.</p>
162</blockquote>
163<div id="use-the-k-m-approach-instead-of-m-k" class="section level2">
164<h2><span class="header-section-number">2.1</span> Use the “K-M” approach instead of “M-K”</h2>
165<p>Please read this chapter about the “K-M”/“M-K” approaches in <code>bookdown</code>:
166<a href="https://bookdown.org/yihui/bookdown/new-session.html" class="uri">https://bookdown.org/yihui/bookdown/new-session.html</a></p>
167<p>To generate cross-format tables with <code>kableExtra</code> in a multi-format bookdown project, you will have to use the “M-K” approach by setting <code>new_session: true</code> in <code>_bookdown.yml</code>. Somehow the “M-K” approach, which merges chapters to a big Rmd and then renders, shares the global environment across formats. For now, I’m not sure if this is a bug or intended behavior. It might be fixable in the future but please don’t count on that. By setting <code>new_session: true</code>, we force R to use a new session for every chapter for different formats. In this way, tables are generated differently in different formats.</p>
168<p>Note that the “M-K” approach is slower than the “K-M” approach. At the same time, packages and data are not shared accross chapter.</p>
169<pre><code># Example _bookdown.yml
170book_filename: &quot;bookdown_example&quot;
171delete_merged_file: true
172new_session: true
173language:
174 ui:
175 chapter_name: &quot;Chapter &quot;</code></pre>
176</div>
Hao Zhu5250ab52018-10-23 15:25:14 -0400[diff] [blame]177<div id="prepare-your-tables-for-all-formats" class="section level2">
178<h2><span class="header-section-number">2.2</span> Prepare Your Tables for All Formats</h2>
Hao Zhuc1450882018-10-03 17:56:26 -0400[diff] [blame]179<p>In most cases, functions in <code>kable</code> and <code>kableExtra</code> use the same API to accomplish the same styling task in HTML and LaTeX. However, you also need some format specific settings so your tables will look good in both formats. Some common items here include the <code>booktabs</code> and <code>longtable</code> settings in <code>kable</code> and the <code>bootstrap_options</code> and <code>latex_options</code> in <code>kable_styling</code>.</p>
Hao Zhu5250ab52018-10-23 15:25:14 -0400[diff] [blame]180<p>Here is an example for a table that will work in HTML, LaTeX &amp; EPUB.</p>
Hao Zhuc1450882018-10-03 17:56:26 -0400[diff] [blame]181<pre class="sourceCode r"><code class="sourceCode r"><span class="kw">library</span>(kableExtra)
Hao Zhu5250ab52018-10-23 15:25:14 -0400[diff] [blame]182<span class="kw">library</span>(dplyr)</code></pre>
183<pre><code>## Warning: package &#39;dplyr&#39; was built under R version 3.5.1</code></pre>
184<pre><code>##
185## Attaching package: &#39;dplyr&#39;</code></pre>
186<pre><code>## The following objects are masked from &#39;package:stats&#39;:
187##
188## filter, lag</code></pre>
189<pre><code>## The following objects are masked from &#39;package:base&#39;:
190##
191## intersect, setdiff, setequal, union</code></pre>
192<pre class="sourceCode r"><code class="sourceCode r"><span class="kw">options</span>(<span class="dt">kableExtra.html.bsTable =</span> T)
193iris[<span class="dv">1</span><span class="op">:</span><span class="dv">10</span>, ] <span class="op">%&gt;%</span>
194<span class="st"> </span><span class="kw">mutate_if</span>(is.numeric, <span class="cf">function</span>(x) {
195 <span class="kw">cell_spec</span>(x, <span class="dt">bold =</span> T,
196 <span class="dt">color =</span> <span class="kw">spec_color</span>(x, <span class="dt">end =</span> <span class="fl">0.9</span>),
197 <span class="dt">font_size =</span> <span class="kw">spec_font_size</span>(x))
198 }) <span class="op">%&gt;%</span>
199<span class="st"> </span><span class="kw">mutate</span>(<span class="dt">Species =</span> <span class="kw">cell_spec</span>(
200 Species, <span class="dt">color =</span> <span class="st">&quot;white&quot;</span>, <span class="dt">bold =</span> T,
201 <span class="dt">background =</span> <span class="kw">spec_color</span>(<span class="dv">1</span><span class="op">:</span><span class="dv">10</span>, <span class="dt">end =</span> <span class="fl">0.9</span>,
202 <span class="dt">option =</span> <span class="st">&quot;A&quot;</span>, <span class="dt">direction =</span> <span class="dv">-1</span>)
203 )) <span class="op">%&gt;%</span>
204<span class="st"> </span><span class="kw">kable</span>(<span class="dt">escape =</span> F, <span class="dt">align =</span> <span class="st">&quot;c&quot;</span>, <span class="dt">booktabs =</span> T) <span class="op">%&gt;%</span>
205<span class="st"> </span><span class="kw">kable_styling</span>(<span class="kw">c</span>(<span class="st">&quot;striped&quot;</span>, <span class="st">&quot;condensed&quot;</span>),
206 <span class="dt">latex_options =</span> <span class="st">&quot;striped&quot;</span>,
207 <span class="dt">full_width =</span> F)</code></pre>
208<table class="table table-striped table-condensed" style="width: auto !important; margin-left: auto; margin-right: auto;">
Hao Zhuc1450882018-10-03 17:56:26 -0400[diff] [blame]209<thead>
210<tr>
Hao Zhu5250ab52018-10-23 15:25:14 -0400[diff] [blame]211<th style="text-align:center;">
212Sepal.Length
Hao Zhuc1450882018-10-03 17:56:26 -0400[diff] [blame]213</th>
Hao Zhu5250ab52018-10-23 15:25:14 -0400[diff] [blame]214<th style="text-align:center;">
215Sepal.Width
Hao Zhuc1450882018-10-03 17:56:26 -0400[diff] [blame]216</th>
Hao Zhu5250ab52018-10-23 15:25:14 -0400[diff] [blame]217<th style="text-align:center;">
218Petal.Length
Hao Zhuc1450882018-10-03 17:56:26 -0400[diff] [blame]219</th>
Hao Zhu5250ab52018-10-23 15:25:14 -0400[diff] [blame]220<th style="text-align:center;">
221Petal.Width
Hao Zhuc1450882018-10-03 17:56:26 -0400[diff] [blame]222</th>
Hao Zhu5250ab52018-10-23 15:25:14 -0400[diff] [blame]223<th style="text-align:center;">
224Species
Hao Zhuc1450882018-10-03 17:56:26 -0400[diff] [blame]225</th>
226</tr>
227</thead>
228<tbody>
229<tr>
Hao Zhu5250ab52018-10-23 15:25:14 -0400[diff] [blame]230<td style="text-align:center;">
231<span style=" font-weight: bold; color: rgba(40, 174, 128, 1);font-size: 14px;">5.1</span>
Hao Zhuc1450882018-10-03 17:56:26 -0400[diff] [blame]232</td>
Hao Zhu5250ab52018-10-23 15:25:14 -0400[diff] [blame]233<td style="text-align:center;">
234<span style=" font-weight: bold; color: rgba(31, 154, 138, 1);font-size: 13px;">3.5</span>
Hao Zhuc1450882018-10-03 17:56:26 -0400[diff] [blame]235</td>
Hao Zhu5250ab52018-10-23 15:25:14 -0400[diff] [blame]236<td style="text-align:center;">
237<span style=" font-weight: bold; color: rgba(62, 75, 138, 1);font-size: 10px;">1.4</span>
Hao Zhuc1450882018-10-03 17:56:26 -0400[diff] [blame]238</td>
Hao Zhu5250ab52018-10-23 15:25:14 -0400[diff] [blame]239<td style="text-align:center;">
240<span style=" font-weight: bold; color: rgba(53, 96, 141, 1);font-size: 11px;">0.2</span>
Hao Zhuc1450882018-10-03 17:56:26 -0400[diff] [blame]241</td>
Hao Zhu5250ab52018-10-23 15:25:14 -0400[diff] [blame]242<td style="text-align:center;">
243<span style=" font-weight: bold; color: white;border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: rgba(254, 206, 145, 1);">setosa</span>
Hao Zhuc1450882018-10-03 17:56:26 -0400[diff] [blame]244</td>
245</tr>
246<tr>
Hao Zhu5250ab52018-10-23 15:25:14 -0400[diff] [blame]247<td style="text-align:center;">
248<span style=" font-weight: bold; color: rgba(37, 131, 142, 1);font-size: 12px;">4.9</span>
Hao Zhuc1450882018-10-03 17:56:26 -0400[diff] [blame]249</td>
Hao Zhu5250ab52018-10-23 15:25:14 -0400[diff] [blame]250<td style="text-align:center;">
251<span style=" font-weight: bold; color: rgba(72, 34, 116, 1);font-size: 9px;">3</span>
Hao Zhuc1450882018-10-03 17:56:26 -0400[diff] [blame]252</td>
Hao Zhu5250ab52018-10-23 15:25:14 -0400[diff] [blame]253<td style="text-align:center;">
254<span style=" font-weight: bold; color: rgba(62, 75, 138, 1);font-size: 10px;">1.4</span>
Hao Zhuc1450882018-10-03 17:56:26 -0400[diff] [blame]255</td>
Hao Zhu5250ab52018-10-23 15:25:14 -0400[diff] [blame]256<td style="text-align:center;">
257<span style=" font-weight: bold; color: rgba(53, 96, 141, 1);font-size: 11px;">0.2</span>
Hao Zhuc1450882018-10-03 17:56:26 -0400[diff] [blame]258</td>
Hao Zhu5250ab52018-10-23 15:25:14 -0400[diff] [blame]259<td style="text-align:center;">
260<span style=" font-weight: bold; color: white;border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: rgba(254, 160, 109, 1);">setosa</span>
Hao Zhuc1450882018-10-03 17:56:26 -0400[diff] [blame]261</td>
262</tr>
263<tr>
Hao Zhu5250ab52018-10-23 15:25:14 -0400[diff] [blame]264<td style="text-align:center;">
265<span style=" font-weight: bold; color: rgba(57, 87, 140, 1);font-size: 10px;">4.7</span>
Hao Zhuc1450882018-10-03 17:56:26 -0400[diff] [blame]266</td>
Hao Zhu5250ab52018-10-23 15:25:14 -0400[diff] [blame]267<td style="text-align:center;">
268<span style=" font-weight: bold; color: rgba(56, 88, 140, 1);font-size: 10px;">3.2</span>
Hao Zhuc1450882018-10-03 17:56:26 -0400[diff] [blame]269</td>
Hao Zhu5250ab52018-10-23 15:25:14 -0400[diff] [blame]270<td style="text-align:center;">
271<span style=" font-weight: bold; color: rgba(68, 1, 84, 1);font-size: 8px;">1.3</span>
Hao Zhuc1450882018-10-03 17:56:26 -0400[diff] [blame]272</td>
Hao Zhu5250ab52018-10-23 15:25:14 -0400[diff] [blame]273<td style="text-align:center;">
274<span style=" font-weight: bold; color: rgba(53, 96, 141, 1);font-size: 11px;">0.2</span>
Hao Zhuc1450882018-10-03 17:56:26 -0400[diff] [blame]275</td>
Hao Zhu5250ab52018-10-23 15:25:14 -0400[diff] [blame]276<td style="text-align:center;">
277<span style=" font-weight: bold; color: white;border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: rgba(246, 110, 92, 1);">setosa</span>
Hao Zhuc1450882018-10-03 17:56:26 -0400[diff] [blame]278</td>
279</tr>
280<tr>
Hao Zhu5250ab52018-10-23 15:25:14 -0400[diff] [blame]281<td style="text-align:center;">
282<span style=" font-weight: bold; color: rgba(67, 62, 133, 1);font-size: 10px;">4.6</span>
Hao Zhuc1450882018-10-03 17:56:26 -0400[diff] [blame]283</td>
Hao Zhu5250ab52018-10-23 15:25:14 -0400[diff] [blame]284<td style="text-align:center;">
285<span style=" font-weight: bold; color: rgba(67, 62, 133, 1);font-size: 10px;">3.1</span>
Hao Zhuc1450882018-10-03 17:56:26 -0400[diff] [blame]286</td>
Hao Zhu5250ab52018-10-23 15:25:14 -0400[diff] [blame]287<td style="text-align:center;">
288<span style=" font-weight: bold; color: rgba(37, 131, 142, 1);font-size: 12px;">1.5</span>
Hao Zhuc1450882018-10-03 17:56:26 -0400[diff] [blame]289</td>
Hao Zhu5250ab52018-10-23 15:25:14 -0400[diff] [blame]290<td style="text-align:center;">
291<span style=" font-weight: bold; color: rgba(53, 96, 141, 1);font-size: 11px;">0.2</span>
Hao Zhuc1450882018-10-03 17:56:26 -0400[diff] [blame]292</td>
Hao Zhu5250ab52018-10-23 15:25:14 -0400[diff] [blame]293<td style="text-align:center;">
294<span style=" font-weight: bold; color: white;border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: rgba(222, 73, 104, 1);">setosa</span>
Hao Zhuc1450882018-10-03 17:56:26 -0400[diff] [blame]295</td>
296</tr>
297<tr>
Hao Zhu5250ab52018-10-23 15:25:14 -0400[diff] [blame]298<td style="text-align:center;">
299<span style=" font-weight: bold; color: rgba(31, 154, 138, 1);font-size: 13px;">5</span>
Hao Zhuc1450882018-10-03 17:56:26 -0400[diff] [blame]300</td>
Hao Zhu5250ab52018-10-23 15:25:14 -0400[diff] [blame]301<td style="text-align:center;">
302<span style=" font-weight: bold; color: rgba(41, 175, 127, 1);font-size: 14px;">3.6</span>
Hao Zhuc1450882018-10-03 17:56:26 -0400[diff] [blame]303</td>
Hao Zhu5250ab52018-10-23 15:25:14 -0400[diff] [blame]304<td style="text-align:center;">
305<span style=" font-weight: bold; color: rgba(62, 75, 138, 1);font-size: 10px;">1.4</span>
Hao Zhuc1450882018-10-03 17:56:26 -0400[diff] [blame]306</td>
Hao Zhu5250ab52018-10-23 15:25:14 -0400[diff] [blame]307<td style="text-align:center;">
308<span style=" font-weight: bold; color: rgba(53, 96, 141, 1);font-size: 11px;">0.2</span>
Hao Zhuc1450882018-10-03 17:56:26 -0400[diff] [blame]309</td>
Hao Zhu5250ab52018-10-23 15:25:14 -0400[diff] [blame]310<td style="text-align:center;">
311<span style=" font-weight: bold; color: white;border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: rgba(183, 55, 121, 1);">setosa</span>
Hao Zhuc1450882018-10-03 17:56:26 -0400[diff] [blame]312</td>
Hao Zhu5250ab52018-10-23 15:25:14 -0400[diff] [blame]313</tr>
314<tr>
315<td style="text-align:center;">
316<span style=" font-weight: bold; color: rgba(187, 223, 39, 1);font-size: 16px;">5.4</span>
317</td>
318<td style="text-align:center;">
319<span style=" font-weight: bold; color: rgba(187, 223, 39, 1);font-size: 16px;">3.9</span>
320</td>
321<td style="text-align:center;">
322<span style=" font-weight: bold; color: rgba(187, 223, 39, 1);font-size: 16px;">1.7</span>
323</td>
324<td style="text-align:center;">
325<span style=" font-weight: bold; color: rgba(187, 223, 39, 1);font-size: 16px;">0.4</span>
326</td>
327<td style="text-align:center;">
328<span style=" font-weight: bold; color: white;border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: rgba(140, 41, 129, 1);">setosa</span>
329</td>
330</tr>
331<tr>
332<td style="text-align:center;">
333<span style=" font-weight: bold; color: rgba(67, 62, 133, 1);font-size: 10px;">4.6</span>
334</td>
335<td style="text-align:center;">
336<span style=" font-weight: bold; color: rgba(37, 131, 142, 1);font-size: 12px;">3.4</span>
337</td>
338<td style="text-align:center;">
339<span style=" font-weight: bold; color: rgba(62, 75, 138, 1);font-size: 10px;">1.4</span>
340</td>
341<td style="text-align:center;">
342<span style=" font-weight: bold; color: rgba(34, 168, 132, 1);font-size: 13px;">0.3</span>
343</td>
344<td style="text-align:center;">
345<span style=" font-weight: bold; color: white;border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: rgba(100, 26, 128, 1);">setosa</span>
346</td>
347</tr>
348<tr>
349<td style="text-align:center;">
350<span style=" font-weight: bold; color: rgba(31, 154, 138, 1);font-size: 13px;">5</span>
351</td>
352<td style="text-align:center;">
353<span style=" font-weight: bold; color: rgba(37, 131, 142, 1);font-size: 12px;">3.4</span>
354</td>
355<td style="text-align:center;">
356<span style=" font-weight: bold; color: rgba(37, 131, 142, 1);font-size: 12px;">1.5</span>
357</td>
358<td style="text-align:center;">
359<span style=" font-weight: bold; color: rgba(53, 96, 141, 1);font-size: 11px;">0.2</span>
360</td>
361<td style="text-align:center;">
362<span style=" font-weight: bold; color: white;border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: rgba(60, 15, 112, 1);">setosa</span>
363</td>
364</tr>
365<tr>
366<td style="text-align:center;">
367<span style=" font-weight: bold; color: rgba(68, 1, 84, 1);font-size: 8px;">4.4</span>
368</td>
369<td style="text-align:center;">
370<span style=" font-weight: bold; color: rgba(68, 1, 84, 1);font-size: 8px;">2.9</span>
371</td>
372<td style="text-align:center;">
373<span style=" font-weight: bold; color: rgba(62, 75, 138, 1);font-size: 10px;">1.4</span>
374</td>
375<td style="text-align:center;">
376<span style=" font-weight: bold; color: rgba(53, 96, 141, 1);font-size: 11px;">0.2</span>
377</td>
378<td style="text-align:center;">
379<span style=" font-weight: bold; color: white;border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: rgba(20, 14, 54, 1);">setosa</span>
380</td>
381</tr>
382<tr>
383<td style="text-align:center;">
384<span style=" font-weight: bold; color: rgba(37, 131, 142, 1);font-size: 12px;">4.9</span>
385</td>
386<td style="text-align:center;">
387<span style=" font-weight: bold; color: rgba(67, 62, 133, 1);font-size: 10px;">3.1</span>
388</td>
389<td style="text-align:center;">
390<span style=" font-weight: bold; color: rgba(37, 131, 142, 1);font-size: 12px;">1.5</span>
391</td>
392<td style="text-align:center;">
393<span style=" font-weight: bold; color: rgba(68, 1, 84, 1);font-size: 8px;">0.1</span>
394</td>
395<td style="text-align:center;">
396<span style=" font-weight: bold; color: white;border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: rgba(0, 0, 4, 1);">setosa</span>
Hao Zhuc1450882018-10-03 17:56:26 -0400[diff] [blame]397</td>
398</tr>
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400</table>
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