pom.xml

<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0"
         xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
         xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
    <modelVersion>4.0.0</modelVersion>

    <groupId>groupId</groupId>
    <artifactId>totalngrams</artifactId>
    <version>2.1.0</version>

    <properties>
        <project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
        <maven.compiler.source>17</maven.compiler.source>
        <maven.compiler.target>17</maven.compiler.target>
        <!--  Use the release flag only if you are using Java 9+  -->
        <!--  <maven.compiler.release>8</maven.compiler.release>  -->
        <!-- verbose is useful for debugging purposes -->
        <maven.compiler.verbose>true</maven.compiler.verbose>     </properties>

    <build>
        <resources>
            <resource>
                <directory>src/main/xml</directory>
                <includes>
                    <include>**/*.xml</include>
                </includes>
            </resource>
            <resource>
                <directory>src/main/resources</directory>
                <includes>
                    <include>**/*.properties</include>
                </includes>
            </resource>
        </resources>

        <plugins>

            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-javadoc-plugin</artifactId>
                <version>3.4.1</version>
                <configuration>
                    <failOnError>false</failOnError>
                    <source>${maven.compiler.target}</source>
                    <javadocExecutable>${java.home}/bin/javadoc
                    </javadocExecutable>
                </configuration>
                <executions>
                    <execution>
                        <id>attach-javadocs</id>
                        <goals>
                            <goal>javadoc-no-fork</goal>
                            <goal>jar</goal>
                        </goals>
                        <configuration>
                            <failOnError>false</failOnError>
                        </configuration>
                    </execution>
                </executions>
            </plugin>
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-jar-plugin</artifactId>
                <version>3.2.0</version>
                <configuration>
                    <archive>
                        <index>true</index>
                        <manifest>
                            <addClasspath>true</addClasspath>
                            <classpathPrefix>dependency/</classpathPrefix>
                            <mainClass>org.ids_mannheim.TotalNGrams</mainClass>
                        </manifest>
                    </archive>
                </configuration>
            </plugin>
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-compiler-plugin</artifactId>
                <version>3.10.1</version>
                <configuration>
                    <!-- or whatever version you use -->
                    <source>${maven.compiler.source}</source>
                    <target>${maven.compiler.target}</target>
                    <showDeprecation>true</showDeprecation>
                    <annotationProcessorPaths>
                        <path>
                            <groupId>info.picocli</groupId>
                            <artifactId>picocli-codegen</artifactId>
                            <version>4.2.0</version>
                        </path>
                    </annotationProcessorPaths>
                </configuration>
                <executions>
                    <!-- Replacing default-compile as it is treated specially by maven -->
                    <execution>
                        <id>default-compile</id>
                        <phase>none</phase>
                    </execution>
                    <!-- Replacing default-testCompile as it is treated specially by
                      maven -->
                    <execution>
                        <id>default-testCompile</id>
                        <phase>none</phase>
                    </execution>
                    <execution>
                        <id>java-compile</id>
                        <phase>compile</phase>
                        <goals>
                            <goal>compile</goal>
                        </goals>
                    </execution>
                    <execution>
                        <id>java-test-compile</id>
                        <phase>test-compile</phase>
                        <goals>
                            <goal>testCompile</goal>
                        </goals>
                    </execution>
                </executions>
            </plugin>

             <plugin>
            <artifactId>maven-assembly-plugin</artifactId>
                <executions>
                    <execution>
                        <phase>package</phase>
                        <goals>
                            <goal>single</goal>
                        </goals>
                    </execution>
                </executions>
                <configuration>
                    <archive>
                        <index>true</index>
                        <manifest>
                            <addClasspath>true</addClasspath>
                            <classpathPrefix>dependency/</classpathPrefix>
                            <mainClass>org.ids_mannheim.TotalNGrams</mainClass>
                        </manifest>
                    </archive>
                    <descriptorRefs>
                        <descriptorRef>jar-with-dependencies</descriptorRef>
                    </descriptorRefs>
                    <appendAssemblyId>false</appendAssemblyId>
                </configuration>
            </plugin>

            <plugin>
                <groupId>org.codehaus.mojo</groupId>
                <artifactId>appassembler-maven-plugin</artifactId>
                <version>1.10</version>
                <executions>
                    <execution>
                        <phase>package</phase>
                        <goals>
                            <goal>assemble</goal>
                        </goals>
                    </execution>
                </executions>
                <configuration>
                    <binFolder>bin</binFolder>
                    <extraJvmArguments>-XX:MaxRAMPercentage=85 -Dgroovy.grape.enable=false</extraJvmArguments>
                    <binFileExtensions>
                        <unix/>
                    </binFileExtensions>
                    <programs>
                        <program>
                            <mainClass>org.ids_mannheim.TotalNGrams</mainClass>
                            <id>totalngrams</id>
                        </program>
                        <program>
                            <mainClass>org.ids_mannheim.GeneratePseudonymKey</mainClass>
                            <id>generate_pseudonym_key</id>
                        </program>
                        <program>
                            <mainClass>org.ids_mannheim.Pseudonymize</mainClass>
                            <id>pseudonymize</id>
                        </program>
                        <program>
                            <mainClass>org.ids_mannheim.FilterKeys</mainClass>
                            <id>filter_keys</id>
                        </program>
                    </programs>
                </configuration>
            </plugin>
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-surefire-plugin</artifactId>
                <version>2.22.2</version>
                <configuration>
                    <forkCount>1C</forkCount>
                    <includes>
                        <include>**/*Test.java</include>
                    </includes>
                    <argLine>-Xmx32768m</argLine>
                </configuration>
            </plugin>
        </plugins>
    </build>

    <profiles>
        <profile>
            <id>activate-this-only-outside-intellij</id>
            <activation>
                <property>
                    <name>!idea.version</name>
                </property>
            </activation>

            <build>
                <plugins>
                    <plugin>
                        <artifactId>maven-compiler-plugin</artifactId>
                        <version>3.10.1</version>
                        <configuration>
                            <compilerId>groovy-eclipse-compiler</compilerId>
                            <compilerArguments>
                                <configScript>${project.basedir}/config.groovy</configScript>
                            </compilerArguments>
                        </configuration>
                        <dependencies>
                            <dependency>
                                <groupId>org.codehaus.groovy</groupId>
                                <artifactId>groovy-eclipse-compiler</artifactId>
                                <version>3.8.0</version>
                            </dependency>
                            <dependency>
                                <groupId>org.codehaus.groovy</groupId>
                                <artifactId>groovy-eclipse-batch</artifactId>
                                <version>4.0.6-02</version>
                            </dependency>
                            <dependency>
                                <groupId>org.apache.ivy</groupId>
                                <artifactId>ivy</artifactId>
                                <version>2.5.1</version>
                            </dependency>
                        </dependencies>
                    </plugin>
                </plugins>
            </build>
            <dependencies>
                <dependency>
                    <groupId>org.codehaus.groovy</groupId>
                    <artifactId>groovy-eclipse-compiler</artifactId>
                    <version>3.8.0</version>
                </dependency>
                <dependency>
                    <groupId>org.codehaus.groovy</groupId>
                    <artifactId>groovy-eclipse-batch</artifactId>
                    <version>4.0.6-02</version>
                </dependency>
            </dependencies>

            <repositories>
                <repository>
                    <id>groovy-libs-release-local</id>
                    <url>https://groovy.jfrog.io/artifactory/plugins-release-local</url>
                </repository>
            </repositories>

            <pluginRepositories>
                <pluginRepository>
                    <id>groovy-plugins-release-local</id>
                    <url>https://groovy.jfrog.io/artifactory/plugins-release-local</url>
                </pluginRepository>
            </pluginRepositories>
        </profile>
    </profiles>

    <dependencies>
        <dependency>
            <groupId>info.picocli</groupId>
            <artifactId>picocli</artifactId>
            <version>4.6.3</version>
        </dependency>
        <!-- https://mvnrepository.com/artifact/org.anarres/parallelgzip -->
        <dependency>
            <groupId>org.anarres</groupId>
            <artifactId>parallelgzip</artifactId>
            <version>1.0.5</version>
        </dependency>
        <dependency>
            <groupId>org.junit.jupiter</groupId>
            <artifactId>junit-jupiter</artifactId>
            <version>5.9.0</version>
            <scope>test</scope>
        </dependency>
        <dependency>
            <groupId>org.bouncycastle</groupId>
            <artifactId>bcprov-jdk15on</artifactId>
            <version>1.70</version>
        </dependency>
        <!-- https://mvnrepository.com/artifact/org.codehaus.mojo/appassembler-maven-plugin -->
        <dependency>
            <groupId>org.codehaus.mojo</groupId>
            <artifactId>appassembler-maven-plugin</artifactId>
            <version>2.1.0</version>
        </dependency>
        <!-- https://mvnrepository.com/artifact/org.apache.maven.plugins/maven-surefire-plugin -->
        <dependency>
            <groupId>org.apache.maven.plugins</groupId>
            <artifactId>maven-surefire-plugin</artifactId>
            <version>2.22.2</version>
        </dependency>
        <dependency>
            <groupId>org.jetbrains</groupId>
            <artifactId>annotations</artifactId>
            <version>23.0.0</version>
            <scope>compile</scope>
        </dependency>
        <dependency>
            <groupId>junit</groupId>
            <artifactId>junit</artifactId>
            <version>4.13.2</version>
            <scope>test</scope>
        </dependency>
        <dependency>
            <groupId>org.tukaani</groupId>
            <artifactId>xz</artifactId>
            <version>1.9</version>
        </dependency>
        <dependency>
            <groupId>org.apache.groovy</groupId>
            <artifactId>groovy</artifactId>
            <version>4.0.6</version>
        </dependency>

        <!-- https://mvnrepository.com/artifact/org.codehaus.groovy/groovy-eclipse-batch -->

        <dependency>
            <groupId>org.codehaus.gpars</groupId>
            <artifactId>gpars</artifactId>
            <version>1.2.1</version>
        </dependency>
        <dependency>
            <groupId>org.apache.ivy</groupId>
            <artifactId>ivy</artifactId>
            <version>2.5.1</version>
            <scope>compile</scope>
            <optional>true</optional>
        </dependency>
        <dependency>
            <groupId>info.picocli</groupId>
            <artifactId>picocli-groovy</artifactId>
            <version>4.6.3</version>
        </dependency>
        <dependency>
            <groupId>org.apache.groovy</groupId>
            <artifactId>groovy-cli-picocli</artifactId>
            <version>4.0.6</version>
        </dependency>

        <dependency>
            <groupId>commons-cli</groupId>
            <artifactId>commons-cli</artifactId>
            <version>1.2</version>
        </dependency>
    </dependencies>


</project>