| #!/usr/bin/env perl |
| use strict; |
| use warnings; |
| use POSIX; |
| use Log::Any '$log'; |
| use Log::Any::Adapter; |
| use Pod::Usage; |
| use Getopt::Long qw(GetOptions :config no_auto_abbrev); |
| use Encode; |
| |
| my $MAX_SENTENCE_LENGTH=10000; |
| my $COMMENT_START="#"; |
| my $COMMENT_END=""; |
| |
| my $test=0; |
| my $text_no=0; |
| my %opts; |
| my %plain_texts; |
| my %sentence_ends; |
| my %metadata; |
| |
| my $offsets = 1; |
| my $comments = 1; |
| my $extract_metadata = 0; |
| my @extract_metadata_regex; |
| |
| my $lm_training_data = 0; |
| |
| our $VERSION = '0.6.0'; |
| |
| our $VERSION_MSG = "\nkorapxml2conllu - v$VERSION\n"; |
| |
| use constant { |
| # Set to 1 for minimal more debug output (no need to be parametrized) |
| DEBUG => $ENV{KORAPXMLCONLLU_DEBUG} // 0 |
| }; |
| |
| GetOptions( |
| 'sigle-pattern|p=s' => \(my $sigle_pattern = ''), |
| 'extract-attributes-regex|e=s' => \(my $extract_attributes_regex = ''), |
| 's-bounds-from-morpho' => \(my $s_bounds_from_morpho = 0), |
| 'log|l=s' => \(my $log_level = 'warn'), |
| 'columns|c=n' => \(my $columns = 10), |
| 'word2vec|lm-training-data!' => \$lm_training_data, |
| 'token-separator|s=s' => \(my $token_separator = "\n"), |
| 'offsets!' => \$offsets, |
| 'comments!' => \$comments, |
| 'extract-metadata-regex|m=s@' => \@extract_metadata_regex, |
| 'help|h' => sub { |
| pod2usage( |
| -verbose => 99, |
| -sections => 'NAME|DESCRIPTION|SYNOPSIS|ARGUMENTS|OPTIONS|EXAMPLES', |
| -msg => $VERSION_MSG, |
| -output => '-' |
| ) |
| }, |
| 'version|v' => sub { |
| pod2usage( |
| -verbose => 0, |
| -msg => $VERSION_MSG, |
| -output => '-' |
| ); |
| } |
| ); |
| |
| if (@extract_metadata_regex) { |
| $extract_metadata = 1; |
| } |
| |
| # Establish logger |
| binmode(STDERR, ':encoding(UTF-8)'); |
| Log::Any::Adapter->set('Stderr', log_level => $log_level); |
| $log->notice('Debugging is activated') if DEBUG; |
| |
| if ($lm_training_data) { |
| $columns = 1; |
| $comments = 0; |
| $offsets = 0; |
| $token_separator = " "; |
| } |
| |
| my $docid=""; |
| my ($current_id, $current_from, $current_to, $token); |
| my $current; |
| my ($unknown, $known) = (0, 0); |
| my @current_lines; |
| my %processedFilenames; |
| my $zipsiglepattern = (defined($ENV{ZIPSIGLEPATTERN})? $ENV{ZIPSIGLEPATTERN} : ""); |
| my $baseOnly; |
| my %extras; |
| |
| my ($ID_idx, $FORM_idx, $LEMMA_idx, $UPOS_idx, $XPOS_idx, $FEATS_idx, $HEAD_idx, $DEPREC_idx, $DEPS_idx, $MISC_idx) = (0..9); |
| |
| my $UNZIP = `sh -c 'command -v unzip'`; |
| chomp $UNZIP; |
| |
| |
| if ($UNZIP eq '') { |
| warn('No unzip executable found in PATH.'); |
| return 0; |
| }; |
| |
| foreach my $morpho_zip (@ARGV) { |
| die "cannot open $morpho_zip" if(! -r $morpho_zip); |
| my $data_zip = $morpho_zip; |
| if ($data_zip !~ /\.zip/ && $data_zip =~ /\.conllu?/i) { |
| open(CONLL, "<$data_zip") or die "cannot open $data_zip"; |
| while(<CONLL>) { |
| print; |
| } |
| close(CONLL); |
| next; |
| } |
| $data_zip =~ s/\.([^\/.]+)\.zip$/.zip/; |
| my $foundry = $1; |
| die "cannot open data file $data_zip corresponding to $morpho_zip" if(! -r $data_zip); |
| |
| my $first=1; |
| my @conll = ("_") x 10; |
| my $filename; |
| |
| $baseOnly = $morpho_zip eq $data_zip; |
| my ($morphoOrTokenCommand, $plaintextAndStructureCommand); |
| my $zip_content_pattern = "[sd][ta]*"; |
| if ($extract_metadata) { |
| $zip_content_pattern = "[sdh][tae]*"; |
| } |
| if (!$baseOnly) { |
| $morphoOrTokenCommand = "$UNZIP -c $morpho_zip '*${sigle_pattern}*/morpho.xml' $zipsiglepattern |"; |
| if ($extract_attributes_regex || !$s_bounds_from_morpho) { |
| $plaintextAndStructureCommand = "$UNZIP -c $data_zip '*${sigle_pattern}*/$zip_content_pattern.xml' $zipsiglepattern |"; |
| } else { |
| $log->debug("Not reading structure information."); |
| $plaintextAndStructureCommand = "$UNZIP -c $data_zip '*${sigle_pattern}*/data.xml' $zipsiglepattern |"; |
| } |
| } else { |
| $foundry = "base"; |
| $morphoOrTokenCommand = "$UNZIP -l $morpho_zip '*${sigle_pattern}*/morpho.xml' $zipsiglepattern"; |
| if (`$morphoOrTokenCommand` !~ /morpho\.xml/) { |
| $morphoOrTokenCommand =~ s/morpho\.xml/tokens.xml/; |
| } else { |
| $baseOnly = 0; |
| } |
| $morphoOrTokenCommand =~ s/-l/-c/; |
| $morphoOrTokenCommand .= ' |'; |
| $plaintextAndStructureCommand = "$UNZIP -c $data_zip " . "'*${sigle_pattern}*/$zip_content_pattern.xml' " . "$zipsiglepattern |"; |
| } |
| |
| $log->debug("command to extract annotation and/or tokenization: $morphoOrTokenCommand"); |
| $log->debug("command to extract plain text and structure: $plaintextAndStructureCommand"); |
| |
| open (MORPHO_OR_TOKENPIPE, $morphoOrTokenCommand) or die "cannot unzip $morpho_zip"; |
| open (PLAINTEXTPIPE, $plaintextAndStructureCommand) or die "cannot unzip $data_zip"; |
| print "$COMMENT_START foundry = $foundry$COMMENT_END\n" if ($comments); |
| while (<MORPHO_OR_TOKENPIPE>) { |
| if (/^ inflating: (.*)/) { |
| $filename=$1; |
| while($processedFilenames{$filename} && !eof(MORPHO_OR_TOKENPIPE)) { |
| $log->warn("$filename already processed"); |
| while (<MORPHO_OR_TOKENPIPE>) { |
| last if(/\s+inflating:\s+(.*)/); |
| } |
| $filename=$1 if(!eof(MORPHO_OR_TOKENPIPE) && /\s+inflating:\s+(.*)/); |
| } |
| } elsif(m@(?:^|\s)docid="([^"]+)"@) { |
| last if($test && $text_no++ > 3); |
| if(!$first) { |
| closeDoc(0); |
| } |
| $processedFilenames{$filename}=1; |
| $docid=$1; |
| @current_lines=(); |
| $known=$unknown=0; |
| $current=""; |
| if ($first) { |
| $first = 0; |
| } |
| if(!fetch_plaintext($docid)) { # skip this text |
| while (<MORPHO_OR_TOKENPIPE>) { |
| last if(m@</layer>@); |
| } |
| } |
| print STDOUT "$COMMENT_START filename = $filename$COMMENT_END\n$COMMENT_START text_id = $docid$COMMENT_END\n" if($comments); |
| $log->debug("Analyzing $docid"); |
| } elsif (m@^\s*<f\s+.*name="([^"]+)">([^<]+)</f>@) { |
| if ($1 eq "lemma") { |
| $conll[$LEMMA_idx] = $2; |
| $conll[$LEMMA_idx] =~ s/[\t\n\r]//g; # make sure that lemmas never contain tabs or newlines |
| if($conll[$LEMMA_idx] eq 'UNKNOWN') { |
| $conll[$LEMMA_idx] = "--"; |
| $unknown++; |
| } else { |
| $known++; |
| } |
| } elsif ($1 eq 'pos' || $1 eq "ctag") { |
| $unknown++; |
| $conll[$XPOS_idx] = $conll[$UPOS_idx] = $2; |
| } elsif ($1 eq 'msd') { |
| $conll[$FEATS_idx] = $2; |
| } elsif ($1 eq 'certainty') { |
| $conll[$MISC_idx] = $2; |
| } |
| } elsif (/<span /) { |
| my $last_from = $current_from // -1; |
| ($current_id) = /id="[^0-9]*([^\"]*)"/; |
| ($current_from) = /from="([^\"]*)"/; |
| ($current_to) = /to="([^\"]*)"/; |
| if($extract_attributes_regex) { |
| for (my $i = $last_from + 1; $i <= $current_from; $i++) { |
| if ($extras{$docid}{$i}) { |
| $current .= $extras{$docid}{$i}; |
| undef $extras{$docid}{$i}; |
| } |
| } |
| } |
| # $log->debug("found span: $current_id $current_from $current_to"); |
| $token = substr($plain_texts{$docid}, $current_from, $current_to - $current_from); |
| if (!defined $token || length($token) == 0) { |
| $log->warn("$docid: could not retrieve token at $current_from-$current_to/", length($plain_texts{$docid}), " - ending with: ", substr($plain_texts{$docid},length($plain_texts{$docid})-10)); |
| $token = "_"; |
| } |
| $token=~s/[\t\n\r]//g; # make sure that tokens never contain tabs or newlines |
| @conll = ("_") x 10; |
| $conll[$FORM_idx] = encode("utf-8", $token); |
| if($baseOnly) { |
| my @vals = ($current_from, $current_to); |
| # $log->debug("joining : ", join(" ", @vals)); |
| push @current_lines, \@vals; |
| $known++; |
| $conll[$ID_idx] = $#current_lines+1; |
| if ($columns == 1) { |
| $current .= "$conll[1]$token_separator" ; |
| } else { |
| $current .= join("\t", @conll[0..$columns-1]) . "\n"; # conll columns |
| } |
| fetch_plaintext($docid); |
| if ($sentence_ends{$docid}{$current_to}) { |
| $log->debug("Using sentence end for $docid \@$current_to"); |
| $current .= "\n"; |
| printTokenRanges(); |
| if ($extract_metadata) { |
| for (my $i = 0; $i < @extract_metadata_regex; $i++) { |
| if(!defined($metadata{$docid}[$i])) { |
| $log->warn("$docid: metadata matching /$extract_metadata_regex[$i]/ was not found, using empty string instead"); |
| $metadata{$docid}[$i]=""; |
| } |
| print "$metadata{$docid}[$i]\t"; |
| } |
| } |
| $current =~ s/ $//; |
| print STDOUT $current; |
| $current = ""; |
| $known = 0; |
| $unknown = 0; |
| @current_lines = (); |
| } |
| } |
| } elsif (m@^\s*</fs>@) { |
| my @vals = ($current_from, $current_to); |
| # $log->debug("joining : ", join(" ", @vals)); |
| push @current_lines, \@vals; |
| # convert gathered information to CONLL |
| $conll[$ID_idx] = $#current_lines+1; |
| if ($columns == 1) { |
| $current .= "$conll[1]\n"; |
| } else { |
| $current .= join("\t", @conll[0..$columns-1]) . "\n"; # conll columns |
| } |
| if($sentence_ends{$docid}{$current_to} || ($s_bounds_from_morpho && $conll[$XPOS_idx] eq '$.' || ($conll[$XPOS_idx] eq 'SENT' && $token eq '.')) || $known + $unknown >= $MAX_SENTENCE_LENGTH) { |
| $log->debug("Using sentence end for $docid \@$current_to"); |
| $current .= "\n"; |
| if($known + $unknown > 0) { # only print sentence if it contains some words |
| printTokenRanges(); |
| print STDOUT $current; |
| } |
| $current=""; $known=0; $unknown=0; |
| @current_lines = (); |
| } |
| while (<MORPHO_OR_TOKENPIPE>) { |
| last if (m@</span>@); # only consider first interpretation |
| } |
| } |
| } |
| $current .= "\n"; |
| closeDoc(1); |
| close(MORPHO_OR_TOKENPIPE); |
| close(PLAINTEXTPIPE); |
| } |
| exit; |
| |
| sub printTokenRanges { |
| return if(!$offsets); |
| print "$COMMENT_START start_offsets = ", $current_lines[0]->[0]; |
| foreach my $t (@current_lines) { |
| print STDOUT " $t->[0]"; |
| } |
| print "$COMMENT_END\n$COMMENT_START end_offsets = ", $current_lines[$#current_lines]->[1] if($comments); |
| foreach my $t (@current_lines) { |
| print STDOUT " $t->[1]"; |
| } |
| print "$COMMENT_END\n"; |
| } |
| |
| sub closeDoc { |
| $log->debug("closing doc"); |
| if($known + $unknown > 0) { # only parse a sentence if it has some words |
| chomp $current; |
| chomp $current; |
| chomp $current; |
| $current .= "\n\n"; |
| printTokenRanges(); |
| print STDOUT $current; |
| } |
| } |
| |
| # read data.xml to figure out the tokens |
| # (ideally tokens should also be in in morpho.xml, but they are not) |
| sub fetch_plaintext { |
| my ($target_id) = @_; |
| my $docid; |
| my $text_started=0; |
| my $text_count = 0; |
| my ($current_id, $current_from, $current_to); |
| |
| if($plain_texts{$target_id} && ($s_bounds_from_morpho || $sentence_ends{$target_id}) && (!$extract_metadata || $metadata{$target_id})) { |
| $log->debug("Already got $target_id"); |
| return 1; |
| } |
| while(<PLAINTEXTPIPE>) { |
| if ($extract_metadata) { |
| if (/<textSigle>([^<]+)/) { |
| $docid = $1; |
| $docid =~ s@/@_@; |
| $log->debug("textsigle=$docid"); |
| } |
| for (my $i=0; $i < @extract_metadata_regex; $i++) { |
| if ($_ =~ /$extract_metadata_regex[$i]/) { |
| $metadata{$docid}[$i]=$1; |
| } |
| } |
| } |
| if(/<raw_text[^>]+docid="([^"]*)/) { |
| $docid=$1; |
| $log->debug("Getting plain text for $docid"); |
| $text_started=0; |
| } elsif(/<raw_text\b/) { |
| $text_started=0; |
| } elsif(/(?:^|\s)docid="([^"]*)/) { |
| $docid=$1; |
| $log->debug("Getting plain text for $docid"); |
| } elsif(m@<span @) { |
| ($current_id) = /id="[^0-9]*([^\"]*)"/; |
| ($current_from) = /from="([^\"]*)"/; |
| ($current_to) = /to="([^\"]*)"/; |
| } elsif(m@<f\s[^>]*>s</f>@) { |
| if ($s_bounds_from_morpho) { |
| $log->debug("Ignoring sentence end for $docid \@$current_to because of --s-bounds-from-morpho"); |
| } else { |
| $log->debug("Found sentence end for $docid \@$current_to"); |
| $sentence_ends{$docid}{$current_to} = 1; |
| } |
| } elsif($extract_attributes_regex && m@<f\sname="name"[^>]*>([^<]+)</f>@) { |
| my $current_element = $1; |
| $log->debug("Looking for matching attributes in $docid"); |
| while(<PLAINTEXTPIPE>) { |
| last if(m@</fs>@); |
| if(m@<f\sname="([^"]+)"[^>]*>([^<]+)</f>@) { |
| my $current_node = "$current_element/$1"; |
| my $value = $2; |
| if ($current_node =~ /$extract_attributes_regex/) { |
| $log->debug("Found matching attribute: $docid - $current_node = $value"); |
| $extras{$docid}{$current_from} .= "# $current_node = $value\n"; |
| } |
| } |
| } |
| } elsif (m@<text>(.*)</text>@) { |
| $_= decode("utf-8", $1, Encode::FB_DEFAULT); |
| s/</</go; |
| s/>/>/go; |
| s/&/&/go; |
| tr/…•⋅»«ˮ“”„›‹ʼ‘’‚′‐‑‒–—―⁓⁻₋−﹣－/...""""""'''''''-/; |
| $plain_texts{$docid} = $_; |
| last if(!$extract_attributes_regex && ($text_count++ > 1 && $plain_texts{$target_id} && (!$extract_metadata || $metadata{$target_id}))); |
| } elsif (m@<text>(.*)@) { |
| $_= decode("utf-8", $1, Encode::FB_DEFAULT); |
| s/</</go; |
| s/>/>/go; |
| s/&/&/go; |
| tr/…•⋅»«ˮ“”„›‹ʼ‘’‚′‐‑‒–—―⁓⁻₋−﹣－/...""""""'''''''-/; |
| $plain_texts{$docid} = "$_ "; |
| $text_started=1; |
| } elsif ($text_started && m@(.*)</text>@) { |
| $_= decode("utf-8", $1, Encode::FB_DEFAULT); |
| s/</</go; |
| s/>/>/go; |
| s/&/&/go; |
| tr/…•⋅»«ˮ“”„›‹ʼ‘’‚′‐‑‒–—―⁓⁻₋−﹣－/...""""""'''''''-/; |
| $plain_texts{$docid} .= $_; |
| $text_started=0; |
| last if(!$extract_attributes_regex && ($text_count++ > 1 && $plain_texts{$target_id} && (!$extract_metadata || $metadata{$target_id}))); |
| } elsif ($text_started) { |
| chomp; |
| $_ = decode("utf-8", $_, Encode::FB_DEFAULT) . ' '; |
| s/</</go; |
| s/>/>/go; |
| s/&/&/go; |
| tr/…•⋅»«ˮ“”„›‹ʼ‘’‚′‐‑‒–—―⁓⁻₋−﹣－/...""""""'''''''-/; |
| $plain_texts{$docid} .= $_; |
| } |
| } |
| $log->debug("Got plain text for $docid"); |
| if(defined($ENV{PLAINTEXTFILTER})) { |
| if ($plain_texts{$docid} !~ $ENV{PLAINTEXTFILTER}) { |
| $plain_texts{$docid} = undef; |
| $log->info("Skipping $docid"); |
| return(undef); |
| } else { |
| $log->debug("Using $docid"); |
| } |
| } |
| return(1); |
| } |
| |
| =pod |
| |
| =encoding utf8 |
| |
| =head1 NAME |
| |
| korapxml2conllu - Conversion of KorAP-XML zips to CoNLL-U |
| |
| =head1 SYNOPSIS |
| |
| korapxml2conllu zca15.tree_tagger.zip > zca15.conllu |
| |
| =head1 DESCRIPTION |
| |
| C<korapxml2conllu> is a script to Convert L<KorAP-XML format|https://github.com/KorAP/KorAP-XML-Krill#about-korap-xml> base or morpho zips to CoNLL(-U) format with all information necessary |
| for reconstruction in comment lines. |
| |
| =head1 INSTALLATION |
| |
| $ cpanm https://github.com/KorAP/KorAP-XML-CoNLL-U.git |
| |
| =head1 OPTIONS |
| |
| =over 2 |
| |
| =item B<--sigle-pattern|-p> |
| |
| Convert only texts from the KorAP XML zip files with folder names (i.e. sigles) matching the glob pattern. |
| |
| =item B<--extract-attribute-pattern|-e> |
| |
| Extract element/attribute regular expressions to comments. |
| |
| =item B<--columns>=I<int> | B<-c> I<int> |
| |
| Print n columns (default: 10). If n=1, only the token itself is printed. |
| |
| =item B<--s-bounds-from-morpho> |
| |
| Get sentence boundary information from tagger output rather than from s annotation in structure.xml files. |
| |
| =item B<--token-separator>=I<string> |
| |
| Token separator. |
| |
| =item B<--(no)comments> |
| |
| Switch comment printing on or off (default: on). |
| |
| =item B<--(no)offsets> |
| |
| Switch offsets printing on or off (default: on). |
| |
| =item B<--word2vec> |
| |
| Print output in word2vec (tokenized) one sentence per line format. |
| |
| =item B<--extract-metadata-regex|-m> |
| |
| Can be used to extract and print strings from the text headers. Currently only works together with --word2vec option. |
| For example: |
| |
| korapxml2conllu -m '<textSigle>([^<.]+)' -m '<creatDate>([^<]{7})' --word2vec t/data/wdf19.zip |
| |
| Will print the document sigle, year and month of the creation date and one sentence per line, separated by tabs. |
| |
| =item B<--help|-h> |
| |
| Print help information. |
| |
| =item B<--version|-v> |
| |
| Print version information. |
| |
| |
| =item B<--log|-l> |
| |
| Loglevel for I<Log::Any>. Defaults to C<warn>. |
| |
| =back |
| |
| =head1 EXAMPLES |
| |
| =head2 Extract to CoNNL-U with posting and div ids: |
| |
| korapxml2conllu -e '(posting/id|div/id)' t/data/wdf19.zip |
| |
| =head2 Extract to word2vec input format metadata columns: |
| |
| korapxml2conllu --word2vec t/data/wdf19.zip |
| |
| =head1 COPYRIGHT AND LICENSE |
| |
| Copyright (C) 2021-2022, L<IDS Mannheim|https://www.ids-mannheim.de/> |
| |
| Author: Marc Kupietz |
| |
| Contributors: Nils Diewald |
| |
| L<KorAP::XML::CoNNL-U> is developed as part of the L<KorAP|https://korap.ids-mannheim.de/> |
| Corpus Analysis Platform at the |
| L<Leibniz Institute for the German Language (IDS)|http://ids-mannheim.de/>, |
| member of the |
| L<Leibniz-Gemeinschaft|http://www.leibniz-gemeinschaft.de/>. |
| |
| This program is free software published under the |
| L<BSD-2 License|https://opensource.org/licenses/BSD-2-Clause>. |