script/tei2korapxml

#!/usr/bin/env perl
use strict;
use warnings;

use Log::Any '$log';
use Log::Any::Adapter;
use Pod::Usage;
use Getopt::Long qw(GetOptions :config no_auto_abbrev);

use File::Basename qw(dirname);

use Encode qw(decode);

use XML::CompactTree::XS;
use XML::LibXML::Reader;

use FindBin;
BEGIN {
  unshift @INC, "$FindBin::Bin/../lib";
};

use KorAP::XML::TEI qw!remove_xml_comments!;
use KorAP::XML::TEI::Tokenizer::External;
use KorAP::XML::TEI::Tokenizer::Conservative;
use KorAP::XML::TEI::Tokenizer::Aggressive;
use KorAP::XML::TEI::Annotations::Collector;
use KorAP::XML::TEI::Data;
use KorAP::XML::TEI::Zipper;
use KorAP::XML::TEI::Header;

eval {
  require KorAP::XML::TEI::Tokenizer::KorAP;
  1;
};

our $VERSION = '0.02';

our $VERSION_MSG = "\ntei2korapxml - v$VERSION\n";

# Set to 1 for minimal more debug output (no need to be parametrized)
use constant DEBUG => $ENV{KORAPXMLTEI_DEBUG} // 0;

# Parse options from the command line
GetOptions(
  "root|r=s"  => \(my $_root_dir = '.'),  # name of root directory inside zip file
  "input|i=s" => \(my $input_fname = ''), # input file (yet only TEI I5 Format accepted)
  'tokenizer-call|tc=s' => \(my $tokenizer_call), # Temporary argument for testing purposes
  'tokenizer-korap|tk' => \(my $tokenizer_korap), # use KorAP-tokenizer
  'tokenizer-internal|ti' => \(my $tokenizer_intern), # use intern tokenization (default = no)
  'log|l=s' => \(my $log_level = 'notice'),
  'help|h'    => sub {
    pod2usage(
      -verbose => 99,
      -sections => 'NAME|DESCRIPTION|SYNOPSIS|ARGUMENTS|OPTIONS',
      -msg => $VERSION_MSG,
      -output => '-'
    )
  },
  'version|v' => sub {
    pod2usage(
      -verbose => 0,
      -msg => $VERSION_MSG,
      -output => '-'
    )
  }
);

Log::Any::Adapter->set('Stderr', log_level => $log_level);

$log->notice('Debugging is activated') if DEBUG;

#
# ~~~ parameter (mandatory) ~~~
#
my $_TEXT_BODY        = "text";                        # tag (without attributes), which contains the primary text
# optional
my $_CORP_HEADER_BEG  = "idsHeader type=\"corpus\"";   # just keep the correct order of the attributes and evtl. add an '.*' between them
# optional
my $_DOC_HEADER_BEG   = "idsHeader type=\"document\""; # analog
# mandatory
my $_TEXT_HEADER_BEG  = "idsHeader type=\"text\"";     # analog

#
# ~~~ constants ~~~
#


## extern tokenization
my $_GEN_TOK_EXT = $tokenizer_call || $tokenizer_korap ? 1 : 0;

my $ext_tok;
if ($tokenizer_call) {
  $ext_tok = KorAP::XML::TEI::Tokenizer::External->new($tokenizer_call);
}

elsif ($tokenizer_korap) {
  $ext_tok = KorAP::XML::TEI::Tokenizer::KorAP->new;
};
my $_tok_file_ext  = "tokens.xml";
##


## intern tokenization
my $_GEN_TOK_INT = $tokenizer_intern;                  # simple tokenization (recommended for testing)
my $_tok_file_con  = "tokens_conservative.xml";
my $_tok_file_agg  = "tokens_aggressive.xml";
my $aggr_tok       = KorAP::XML::TEI::Tokenizer::Aggressive->new;
my $cons_tok       = KorAP::XML::TEI::Tokenizer::Conservative->new;
##


my $_tok_dir         = "base";                       # name of directory for storing tokenization files

my $_XCT_LN          = 0;                            # only for debugging: include line numbers in elements of $tree_data
                                                     #  (see also manpage of XML::CompactTree::XS)

my $_header_file     = "header.xml";                 # name of files      containing the  text, document and corpus header
my $_data_file       = "data.xml";                   # name of file       containing the  primary text data (tokens)
my $_structure_dir   = "struct";                     # name of directory  containing the  $_structure_file
my $_structure_file  = "structure.xml";              # name of file       containing all  tags (except ${_TOKEN_TAG}'s) related information
                                                     #                                     (= their names and byte offsets in $_data)
## TODO: optional (different annotation tools can produce more zip-files for feeding into KorAP-XML-Krill)
my $_TOKENS_PROC     = 1;                            # on/off: processing of ${_TOKEN_TAG}'s (default: 1)
my $_tokens_dir      = "tokens";                     # name of directory  containing the  $_tokens_file
my $_tokens_file     = "morpho.xml";                 # name of file       containing all  ${_TOKEN_TAG}'s related information (=their byte offsets in $_data)
                                                     #                                     - evtl. with additional inline annotations
my $_TOKENS_TAG      = "w";                          # name of tag        containing all  information stored in $_tokens_file

## TODO: optional
# handling inline annotations (inside $_TOKENS_TAG)
my $_INLINE_ANNOT    = $ENV{KORAPXMLTEI_INLINE}?1:0; # on/off: set to 1 if inline annotations are present and should be processed (default: 0)


#
# ~~~ variables ~~~
#

# Initialize Token- and Structure-Collector
my $tokens = KorAP::XML::TEI::Annotations::Collector->new;
my $structures = KorAP::XML::TEI::Annotations::Collector->new;


# Initialize Data-Collector
my $data = KorAP::XML::TEI::Data->new;


# Initialize zipper
my $zipper = KorAP::XML::TEI::Zipper->new($_root_dir);
my $input_fh;                                        # input file handle (default: stdin)

my $dir;                                             # text     directory (below $_root_dir)

my ( $text_id,
     $text_id_esc );                                 # '$text_id_esc' = escaped version of $text_id

my ( $reader,                                        # instance of 'XML::LibXML::Reader->new' (on input '$buf_in')
     $tree_data );                                   # instance of 'XML::CompactTree::XS::readSubtreeToPerl' (on input '$reader')

# these are only used inside recursive function 'retr_info'
my ( $_IDX,                                          # value is set dependent on $_XCT_LN - for extracting array of child elements from element in $tree_data
     $e,                                             # element from $tree_data
     ## variables for handling ~ whitespace related issue ~ (it is sometimes necessary, to correct the from-values for some tags)
     $add_one,                                       # ...
     $fval,                                          # ...
     %ws);                                           # hash for indices of whitespace-nodes (needed to recorrect from-values)
                                                     # idea: when closing element, check if it's from-index minus 1 refers to a whitespace-node
                                                     #  (means: 'from-index - 1' is a key in %ws).
                                                     # if this is _not_ the case, then the from-value is one to high => correct it by substracting 1

my $c;                                               # index variables used in loops


#
# ~~~ main ~~~
#

# ~ initializations ~

($_XCT_LN)?($_IDX=5):($_IDX=4);

$fval = 0;

# Normalize regex for header parsing
for ($_CORP_HEADER_BEG,
     $_DOC_HEADER_BEG,
     $_TEXT_HEADER_BEG) {
  s!^([^\s]+)(.*)$!$1\[\^>\]*$2!;
};


# ~ read input and write output (text by text) ~

my ( $pfx, $sfx );

my $tl = 0; # text line (needed for whitespace handling)

$input_fh = *STDIN;  # input file handle (default: stdin)

# Maybe not necessary
$data->reset;

$dir = "";

if ( $input_fname ne '' ){
  unless (open($input_fh, '<', $input_fname)) {
    die $log->fatal("File '$input_fname' could not be opened.");
  };
}

# prevents segfaulting of 'XML::LibXML::Reader' inside 'main()' - see notes on 'PerlIO layers' in  'man XML::LibXML')
# removing 'use open qw(:std :utf8)' would fix this problem too, but using binmode on input is more granular
# see in perluniintro: You can switch encodings on an already opened stream by using "binmode()
# see in perlfunc: If LAYER is omitted or specified as ":raw" the filehandle is made suitable for passing binary data.
binmode $input_fh;

my $pos;
my $input_enc = 'UTF-8';
my $l = length('</' . $_TEXT_BODY) + 1;

# ~ loop (reading input document) ~

MAIN: while ( <$input_fh> ){

  $_ = remove_xml_comments( $input_fh, $_ ); # remove HTML (multi-line) comments (<!--...-->)

  # Set input encoding
  if ( index($_, '<?xml') == 0 && $_ =~ /\sencoding=(['"])([^\1]+?)\1/) {
    $input_enc = $2;
    next;
  };

  $_ = decode($input_enc, $_);

  if ( index($_, $_TEXT_BODY) >= 0 && m#^(.*)<${_TEXT_BODY}(?: [^>]*)?>(.*)$# ){

    # ~ start of text body ~

    $pfx = $1;
    $sfx = $2;

    if ($pfx !~ /^\s*$/ || $sfx !~ /^\s*$/) {
      die $log->fatal("input line number $.: " .
                        "line with opening text-body tag '${_TEXT_BODY}' " .
                        "contains additional information ... => Aborting (line=$_)");
    };

    # text body data extracted from input document ($input_fh), further processed by XML::LibXML::Reader
    my $buf_in = '';

    # Iterate over all lines in the text body
    while (<$input_fh>) {

      $_ = remove_xml_comments( $input_fh, $_ );
      $_ = decode($input_enc, $_);

      # ~ end of text body ~
      if (($pos = index($_, '</' . $_TEXT_BODY)) >= 0) {

        # write data.xml, structure.xml and evtl. morpho.xml and/or tokenization files (s.a.: $_tok_file_ext, $_tok_file_con, $_tok_file_agg)

        if ((substr($_, 0, $pos) . substr($_, $l + $pos)) !~ /^\s*$/) {
          die $log->fatal("input line number $.: " .
                            "line with closing text-body tag '${_TEXT_BODY}'".
                            " contains additional information ... => Aborting (line=$_)");
        };

        if ($dir ne "") {

          $reader = XML::LibXML::Reader->new( string => "<text>$buf_in</text>", huge => 1 );

          #  ~ whitespace handling ~
          #
          #  Every whitespace inside the processed text is 'significant' and recognized as a node of type 'XML_READER_TYPE_SIGNIFICANT_WHITESPACE'
          #   (see function 'retr_info()').
          #
          #  Definition of significant and insignificant whitespace
          #   (source: https://www.oracle.com/technical-resources/articles/wang-whitespace.html):
          #
          #   Significant whitespace is part of the document content and should be preserved.
          #   Insignificant whitespace is used when editing XML documents for readability.
          #    These whitespaces are typically not intended for inclusion in the delivery of the document.
          #

          my $param = XCT_DOCUMENT_ROOT | XCT_IGNORE_COMMENTS | XCT_ATTRIBUTE_ARRAY;

          # _XCT_LINE_NUMBERS is only for debugging
          $param |= XCT_LINE_NUMBERS if $_XCT_LN;
          $tree_data = XML::CompactTree::XS::readSubtreeToPerl( $reader, $param);

          $structures->reset;

          $tokens->reset if $_TOKENS_PROC;

          # ~ whitespace related issue ~
          $add_one = 0;
          %ws = ();

          # ~ recursion ~
          retr_info(1, \$tree_data->[2] ); # parse input data

          if (DEBUG) {
            $log->debug("Writing (utf8-formatted) xml file $dir/$_data_file");
          };

          # ~ write data.xml ~
          $data->to_zip(
            $zipper->new_stream("$dir/${_data_file}"),
            $text_id_esc
          );

          # ~ tokenization ~
          if ($_GEN_TOK_EXT) {

            # Tokenize and output
            $ext_tok->tokenize($data->data)->to_zip(
              $zipper->new_stream("$dir/$_tok_dir/$_tok_file_ext"),
              $text_id_esc
            );
          };

          if ($_GEN_TOK_INT) {

            # Tokenize and output
            $cons_tok->tokenize($data->data)->to_zip(
              $zipper->new_stream("$dir/$_tok_dir/$_tok_file_con"),
              $text_id_esc
            );

            $aggr_tok->tokenize($data->data)->to_zip(
              $zipper->new_stream("$dir/$_tok_dir/$_tok_file_agg"),
              $text_id_esc
            );

            $aggr_tok->reset;
            $cons_tok->reset;
          };

          # ~ write structures ~
          if (!$structures->empty) {
            $structures->to_zip(
              $zipper->new_stream("$dir/$_structure_dir/$_structure_file"),
              $text_id_esc,
              2 # = structure serialization
            );
          };

          # ~ write tokens ~
          if ($_TOKENS_PROC && !$tokens->empty) {
            $tokens->to_zip(
              $zipper->new_stream("$dir/$_tokens_dir/${_tokens_file}"),
              $text_id_esc,
              $_INLINE_ANNOT # Either 0 = tokens without inline or 1 = tokens with inline
            );
          };

          $dir = ""; # reinit.

          # Maybe not necessary
          $data->reset;

        } else { # $dir eq ""

          $log->warn("Maybe empty textSigle => skipping this text ...\ndata=$data");
        }

        next MAIN;
      };

      # ~ inside text body ~

      # ~ whitespace handling ~

      # The idea for the below code fragment was to fix (recreate) missing whitespace in a poorly created corpus, in which linebreaks where inserted
      #  into the text with the addition that maybe (or not) whitespace before those linebreaks was unintenionally stripped.
      #
      # It soon turned out, that it was best to suggest considering just avoiding linebreaks and putting all primary text tokens into one line (see
      #  example further down and notes on 'Input restrictions' in the manpage).
      #
      # Somehow an old first very poor approach remained, which is not stringent, but also doesn't affect one-line text.
      #
      # TODO: Maybe it's best, to keep the stripping of whitespace and to just remove the if-clause and to insert a blank by default (with possibly
      #  an option on how newlines in primary text should be handled (stripped or replaced by a whitespace)).
      #
      # Examples (how primary text with linebreaks would be converted by below code):
      #
      #  '...<w>end</w>\n<w>.</w>...' -> '...<w>end</w> <w>.</w>...'
      #  '...<w>,</w>\n<w>this</w>\n<w>is</w>\n<w>it</w>\n<w>!</w>...' -> '<w>,<w> <w>this</w> <w>is</w> <w>it</w> <w>!</w>'.

      s/^\s+//; s/\s+$//; # remove consecutive whitespace at beginning and end (mostly one newline)

      ### NOTE: this is only relevant, if a text consists of more than one line
      ### TODO: find a better solution, or create a warning, if a text has more than one line ($tl > 1)
      ###  do testing with 2 different corpora (one with only one-line texts, the other with several lines per text)
      if (m/<[^>]+>[^<]/) { # line contains at least one tag with at least one character contents

        # NOTE: not stringent ('...' stands for text):
        #
        #   beg1............................end1  => no blank before 'beg1'
        #   beg2....<pb/>...................end2  => no blank before 'beg2'
        #   beg3....<info attr1="val1"/>....end3  => no blank before 'beg3'
        #   beg4....<test>ok</test>.........end4  =>    blank before 'beg4'
        #
        #     =>  beg1....end1beg2...<pb/>...end2beg3....<info attr1="val1"/>....end3 beg4...<test>ok</test>....end4
        #                                                                            ^
        #                                                                            |_blank between 'end3' and 'beg4'

        $tl++; # counter for text lines

        s/^(.)/ $1/ if $tl > 1; # insert blank before 1st character (for 2nd line and consecutive lines)
      }
      ###

      # add line to buffer
      $buf_in .= $_;
    };

  } elsif (m#^(.*)(<(?:${_TEXT_HEADER_BEG}|${_DOC_HEADER_BEG}|${_CORP_HEADER_BEG}).*)$#) {

    # ~ start of header ~
    $pfx = $1;
    my $content = "$2\n";

    if ($pfx !~ /^\s*$/) {
      die $log->fatal("input line number $.: " .
                        "line with opening header tag" .
                        " is not in expected format ... => Aborting (line=$_)");
    };

    # Parse header
    my $header = KorAP::XML::TEI::Header->new($content, $input_enc)->parse($input_fh);

    # Header was parseable
    if ($header) {

      # Write header to zip
      my $file = $header->dir . '/' . $_header_file;

      $log->debug("Writing file $file") if DEBUG;

      $header->to_zip($zipper->new_stream($file));

      # Header is for text level
      if ($header->type eq 'text') {

        # Remember dir and sigles
        $dir         = $header->dir;
        $text_id     = $header->id;
        $text_id_esc = $header->id_esc;

        # log output for seeing progression
        $log->notice("$0: main(): text_id=".decode('UTF-8', $text_id));

        $tl = 0; # reset (needed for ~ whitespace handling ~)
      }
    }
  }
} #end: while

$zipper->close;

$ext_tok->close if $_GEN_TOK_EXT;

exit(0);


sub retr_info { # called from main()
  # recursion level
  # (1 = topmost level inside retr_info() = should always be level of tag $_TEXT_BODY)
  my $rl = shift;

  #  Notes on how 'XML::CompactTree::XS' works
  #
  #  Example: <node a="v"><node1>some <n/> text</node1><node2>more-text</node2></node>
  #
  #  Print out name of 'node2' for the above example:
  #
  #  echo '<node a="v"><node1>some <n/> text</node1><node2>more-text</node2></node>' | perl -e 'use XML::CompactTree::XS; use XML::LibXML::Reader; $reader = XML::LibXML::Reader->new(IO => STDIN); $data = XML::CompactTree::XS::readSubtreeToPerl( $reader, XCT_DOCUMENT_ROOT | XCT_IGNORE_COMMENTS | XCT_LINE_NUMBERS ); print "\x27".$data->[2]->[0]->[5]->[1]->[1]."\x27\n"'
  #
  #  Exploring the structure of $data ( = reference to below array ):
  #
  #  [ 0: XML_READER_TYPE_DOCUMENT,
  #    1: ?
  #    2: [ 0: [ 0: XML_READER_TYPE_ELEMENT                     <- start recursion with array '$data->[2]' (see main(): retr_info( \$tree_data->[2] ))
  #              1: 'node'
  #              2: ?
  #              3: HASH (attributes)
  #              4: 1 (line number)
  #              5: [ 0: [ 0: XML_READER_TYPE_ELEMENT
  #                        1: 'node1'
  #                        2: ?
  #                        3: undefined (no attributes)
  #                        4: 1 (line number)
  #                        5: [ 0: [ 0: XML_READER_TYPE_TEXT
  #                                  1: 'some '
  #                                ]
  #                             1: [ 0: XML_READER_TYPE_ELEMENT
  #                                  1: 'n'
  #                                  2: ?
  #                                  3: undefined (no attributes)
  #                                  4: 1 (line number)
  #                                  5: undefined (no child-nodes)
  #                                ]
  #                             2: [ 0: XML_READER_TYPE_TEXT
  #                                  1: ' text'
  #                                ]
  #                           ]
  #                      ]
  #                   1: [ 0: XML_READER_TYPE_ELEMENT
  #                        1: 'node2'
  #                        2: ?
  #                        3: undefined (not attributes)
  #                        4: 1 (line number)
  #                        5: [ 0: [ 0: XML_READER_TYPE_TEXT
  #                                  1: 'more-text'
  #                                ]
  #                           ]
  #                      ]
  #                 ]
  #            ]
  #       ]
  #  ]
  #
  #  $data->[0] = 9 (=> type == XML_READER_TYPE_DOCUMENT)
  #
  #  ref($data->[2])                                                         == ARRAY (with 1 element for 'node')
  #  ref($data->[2]->[0])                                                    == ARRAY (with 6 elements)
  #
  #  $data->[2]->[0]->[0]                                                    == 1 (=> type == XML_READER_TYPE_ELEMENT)
  #  $data->[2]->[0]->[1]                                                    == 'node'
  #  ref($data->[2]->[0]->[3])                                               == HASH  (=> ${$data->[2]->[0]->[3]}{a} == 'v')
  #  $data->[2]->[0]->[4]                                                    == 1 (line number)
  #  ref($data->[2]->[0]->[5])                                               == ARRAY (with 2 elements for 'node1' and 'node2')
  #                                                                                     # child-nodes of actual node (see $_IDX)
  #
  #  ref($data->[2]->[0]->[5]->[0])                                          == ARRAY (with 6 elements)
  #  $data->[2]->[0]->[5]->[0]->[0]                                          == 1 (=> type == XML_READER_TYPE_ELEMENT)
  #  $data->[2]->[0]->[5]->[0]->[1]                                          == 'node1'
  #  $data->[2]->[0]->[5]->[0]->[3]                                          == undefined (=> no attribute)
  #  $data->[2]->[0]->[5]->[0]->[4]                                          == 1 (line number)
  #  ref($data->[2]->[0]->[5]->[0]->[5])                                     == ARRAY (with 3 elements for 'some ', '<n/>' and ' text')
  #
  #  ref($data->[2]->[0]->[5]->[0]->[5]->[0])                                == ARRAY (with 2 elements)
  #  $data->[2]->[0]->[5]->[0]->[5]->[0]->[0]                                == 3 (=> type ==  XML_READER_TYPE_TEXT)
  #  $data->[2]->[0]->[5]->[0]->[5]->[0]->[1]                                == 'some '
  #
  #  ref($data->[2]->[0]->[5]->[0]->[5]->[1])                                == ARRAY (with 5 elements)
  #  $data->[2]->[0]->[5]->[0]->[5]->[1]->[0]                                == 1 (=> type == XML_READER_TYPE_ELEMENT)
  #  $data->[2]->[0]->[5]->[0]->[5]->[1]->[1]                                == 'n'
  #  $data->[2]->[0]->[5]->[0]->[5]->[1]->[3]                                == undefined (=> no attribute)
  #  $data->[2]->[0]->[5]->[0]->[5]->[1]->[4]                                == 1 (line number)
  #  $data->[2]->[0]->[5]->[0]->[5]->[1]->[5]                                == undefined (=> no child-nodes)
  #
  #  ref($data->[2]->[0]->[5]->[0]->[5]->[2])                                == ARRAY (with 2 elements)
  #  $data->[2]->[0]->[5]->[0]->[5]->[2]->[0]                                == 3 (=> type ==  XML_READER_TYPE_TEXT)
  #  $data->[2]->[0]->[5]->[0]->[5]->[2]->[1]                                == ' text'
  #
  #
  #  retr_info() starts with the array reference ${$_[0]} (= \$tree_data->[2]), which corresponds to ${\$data->[2]} in the above example.
  #  Hence, the expression @{${$_[0]}} corresponds to @{${\$data->[2]}}, $e to ${${\$data->[2]}}[0] (= $data->[2]->[0]) and $e->[0] to
  #  ${${\$data->[2]}}[0]->[0] (= $data->[2]->[0]->[0]).

  foreach $e (@{${$_[0]}}) { # iteration through all array elements ($_[0] is a reference to an array reference)

    if ($e->[0] == XML_READER_TYPE_ELEMENT) { # element-node (see 'NODE TYPES' in manpage of XML::LibXML::Reader)

      #~~~~
      # from here: tag-node (opening)
      #~~~~

      # ~ handle structures ~

      # $e->[1] represents the tag name
      my $anno = $structures->add_new_annotation($e->[1]);

      # ~ handle tokens ~

      # Add element also to token list
      if ($_TOKENS_PROC && $e->[1] eq $_TOKENS_TAG) {
        $tokens->add_annotation($anno);
      };

      # ~ handle attributes ~

      if (defined $e->[3]) { # only if attributes exist

        for ($c = 0; $c < @{$e->[3]}; $c += 2) {  # with 'XCT_ATTRIBUTE_ARRAY', $node->[3] is an array reference of the form
                                                  #  [ name1, value1, name2, value2, ....] of attribute names and corresponding values.
                                                  # note: arrays are faster (see: http://makepp.sourceforge.net/2.0/perl_performance.html)

          # '$c' references the 'key' and '$c+1' the 'value'
          $anno->add_attribute(
            @{$e->[3]}[$c, $c + 1]
          );
        }
      }


      # ~ index 'from' ~

      # this is, where a normal tag or tokens-tag ($_TOKENS_TAG) starts
      $anno->set_from($data->position + $add_one);

      #~~~~
      # until here: tag-node (opening)
      #~~~~


      # ~~ RECURSION ~~

      if (defined $e->[$_IDX]) {  # do no recursion, if $e->[$_IDX] is not defined (because we have no array of child-nodes, e.g.: <back/>)

        retr_info($rl+1, \$e->[$_IDX]); # recursion with array of child-nodes
      }


      #~~~~~
      # from here: tag-node (closing)
      #~~~~~

      my $pos = $data->position;

      # ~ handle structures and tokens ~

      {
        $fval = $anno->from;

        if ($fval > 0 && not exists $ws{$fval - 1}) { # ~ whitespace related issue ~

          # ~ previous node was a text-node ~

          $anno->set_from($fval - 1);
        }

        # in case this fails, check input
        if (($fval - 1) > $pos) {
          die $log->fatal("text_id='$text_id', " .
                            "processing of structures: " .
                            "from-value ($fval) is 2 or more greater " .
                            "than to-value ($pos) => please check. Aborting");
        };

        # TODO: find example for which this case applies
        #  maybe this is not necessary anymore, because the above recorrection of the from-value suffices
        #
        # TODO: check, if it's better to remove this line and change above check to 'if ( $fval - 1) >= $pos;
        #   do testing with bigger corpus excerpt (wikipedia?)
        $anno->set_from($pos) if $fval == $pos + 1;
        $anno->set_to($pos);
        $anno->set_level($rl);

        # note: use $pos, because the offsets are _between_ the characters (e.g.: word = 'Hello' => from = 0 (before 'H'), to = 5 (after 'o'))
      }

      # ~ whitespace related issue ~
      # clean up
      delete $ws{$fval  - 1} if $fval > 0 && exists $ws{$fval - 1};


      #~~~~
      # until here: tag-node (closing)
      #~~~~


      #~~~~~
      # from here: text- and whitespace-nodes
      #~~~~~

      # The 3rd form of nodes, besides text- (XML_READER_TYPE_TEXT) and tag-nodes (XML_READER_TYPE_ELEMENT) are nodes of the type
      #  'XML_READER_TYPE_SIGNIFICANT_WHITESPACE'.
      #
      # When modifiying the previous example (see: Notes on how 'XML::CompactTree::XS' works) by inserting an additional blank between
      #  '</node1>' and '<node2>', the output for '$data->[2]->[0]->[5]->[1]->[1]' is a blank (' ') and it's type is '14'
      #  (XML_READER_TYPE_SIGNIFICANT_WHITESPACE, see 'man XML::LibXML::Reader'):
      #
      # echo '<node a="v"><node1>some <n/> text</node1> <node2>more-text</node2></node>' | perl -e 'use XML::CompactTree::XS; use XML::LibXML::Reader; $reader = XML::LibXML::Reader->new(IO => STDIN); $data = XML::CompactTree::XS::readSubtreeToPerl( $reader, XCT_DOCUMENT_ROOT | XCT_IGNORE_COMMENTS | XCT_LINE_NUMBERS ); print "node=\x27".$data->[2]->[0]->[5]->[1]->[1]."\x27, type=".$data->[2]->[0]->[5]->[1]->[0]."\n"'

    } elsif ($e->[0] == XML_READER_TYPE_TEXT || $e->[0] == XML_READER_TYPE_SIGNIFICANT_WHITESPACE){

      # Notes on ~ whitespace related issue ~ (referred to the code fragment below)
      #
      # Example: '... <head type="main"><s>Campagne in Frankreich</s></head><head type="sub"> <s>1792</s> ...'
      #
      # Two text-nodes should normally be separated by a blank. In the above example, that would be the 2 text-nodes
      #  'Campagne in Frankreich' and '1792', which are separated by the whitespace-node ' ' (see [2]).
      #
      # The text-node 'Campagne in Frankreich' leads to the setting of '$add_one' to 1, so that when opening the 2nd 'head'-tag,
      #  it's from-index gets set to the correct start-index of '1792' (and not to the start-index of the whitespace-node ' ').
      #
      # The assumption here is, that in most cases there _is_ a whitespace node between 2 text-nodes. The below code fragment
      #  enables a way, to check, if this really _was_ the case for the last 2 'non-tag'-nodes, when closing a tag:
      #
      # When a whitespace-node is read, its from-index is stored as a hash-key (in %ws), to state that it belongs to a ws-node.
      #  So when closing a tag, it can be checked, if the previous 'non-tag'-node (text or whitespace), which is the one before
      #  the last read 'non-tag'-node, was a actually _not_ a ws-node, but instead a text-node. In that case, the from-value of
      #  the last read 'non-tag'-node has to be corrected (see [1]),
      #
      # For whitespace-nodes $add_one is set to 0, so when opening the next tag (in the above example the 2nd 's'-tag), no
      #  additional 1 is added (because this was already done by the whitespace-node itself when incrementing the variable $pos).
      #
      # [1]
      # Now, what happens, when 2 text-nodes are _not_ seperated by a whitespace-node (e.g.: <w>Augen<c>,</c></w>)?
      # In this case, the falsely increased from-value has to be decreased again by 1 when closing the enclosing tag
      #  (see above code fragment '... not exists $ws{ $fval - 1 } ...').
      #
      # [2]
      # Comparing the 2 examples '<w>fu</w> <w>bar</w>' and '<w>fu</w><w> </w><w>bar</w>', is ' ' in both cases handled as a
      #  whitespace-node (XML_READER_TYPE_SIGNIFICANT_WHITESPACE).
      #
      # The from-index of the 2nd w-tag in the second example refers to 'bar', which may not have been the intention
      #  (even though '<w> </w>' doesn't make a lot of sense). TODO: could this be a bug?
      #
      # Empty tags also cling to the next text-token - e.g. in '<w>tok1</w> <w>tok2</w><a><b/></a> <w>tok3</w>' are the from-
      #  and to-indizes for the tags 'a' and 'b' both 12, which is the start-index of the token 'tok3'.

      if ($e->[0] == XML_READER_TYPE_SIGNIFICANT_WHITESPACE) {

        # ~ whitespace-node ~

        # ~ whitespace related issue ~

        $add_one = 0;

        # state, that this from-index belongs to a whitespace-node
        #  ('++' doesn't mean a thing here - maybe it could be used for a consistency check)
        $ws{$data->position}++;

      } else {

        # ~ text-node ~

        $add_one = 1;
      };


      # ~ update $data ~

      $data->append($e->[1]);

      #~~~~~
      # until here: text- and whitespace-nodes
      #~~~~~


      # elsif ( $e->[0] == XML_READER_TYPE_ATTRIBUTE ) # attribute-node
      #   note: attributes cannot be processed like this ( => use 'XCT_ATTRIBUTE_ARRAY' - see above )


    } else { # not yet handled type

      die $log->fatal('Not yet handled type ($e->[0]=' . $e->[0] . ') ... => Aborting');
    }

  } # end: foreach iteration

} # end: sub retr_info

__END__

=pod

=encoding utf8

=head1 NAME

tei2korapxml - Conversion of TEI P5 based formats to KorAP-XML

=head1 SYNOPSIS

  cat corpus.i5.xml | tei2korapxml > corpus.korapxml.zip

=head1 DESCRIPTION

C<tei2korapxml> is a script to convert TEI P5 and
L<I5|https://www1.ids-mannheim.de/kl/projekte/korpora/textmodell.html>
based documents to the
L<KorAP-XML format|https://github.com/KorAP/KorAP-XML-Krill#about-korap-xml>.
If no specific input is defined, data is
read from C<STDIN>. If no specific output is defined, data is written
to C<STDOUT>.

This program is usually called from inside another script.

=head1 FORMATS

=head2 Input restrictions

=over 2

=item

utf8 encoded

=item

TEI P5 formatted input with certain restrictions:

=over 4

=item

B<mandatory>: text-header with integrated textsigle, text-body

=item

B<optional>: corp-header with integrated corpsigle,
doc-header with integrated docsigle

=back

=item

All tokens inside the primary text may not be
newline seperated, because newlines are removed
(see L<KorAP::XML::TEI::Data>) and a conversion of newlines
into blanks between 2 tokens could lead to additional blanks,
where there should be none (e.g.: punctuation characters like C<,> or
C<.> should not be seperated from their predecessor token).
(see also code section C<~ whitespace handling ~>).

=back

=head2 Notes on the output

=over 2

=item

zip file output (default on C<stdout>) with utf8 encoded entries
(which together form the KorAP-XML format)

=back

=head1 INSTALLATION

C<tei2korapxml> requires L<libxml2-dev> bindings to build. When
these bindings are available, the preferred way to install the script is
to use L<cpanm|App::cpanminus>.

  $ cpanm https://github.com/KorAP/KorAP-XML-TEI.git

In case everything went well, the C<tei2korapxml> tool will
be available on your command line immediately.

Minimum requirement for L<KorAP::XML::TEI> is Perl 5.16.

=head1 OPTIONS

=over 2

=item B<--root|-r>

The root directory for output. Defaults to C<.>.

=item B<--help|-h>

Print help information.

=item B<--version|-v>

Print version information.

=item B<--tokenizer-call|-tc>

Call an external tokenizer process, that will tokenize
a single line from STDIN and outputs one token per line.

=item B<--tokenizer-korap|-tk>

Use the standard KorAP/DeReKo tokenizer.

=item B<--tokenizer-internal|-ti>

Tokenize the data using two embedded tokenizers,
that will take an I<Aggressive> and a I<conservative>
approach.

=item B<--log|-l>

Loglevel for I<Log::Any>. Defaults to C<notice>.

=back

=head1 ENVIRONMENT VARIABLES

=over 2

=item B<KORAPXMLTEI_DEBUG>

Activate minimal debugging.
Defaults to C<false>.

=item B<KORAPXMLTEI_INLINE>

Process inline annotations, if present.
Defaults to C<false>.

=back

=head1 COPYRIGHT AND LICENSE

Copyright (C) 2020, L<IDS Mannheim|https://www.ids-mannheim.de/>

Author: Peter Harders

Contributors: Nils Diewald, Marc Kupietz, Carsten Schnober

L<KorAP::XML::TEI> is developed as part of the L<KorAP|https://korap.ids-mannheim.de/>
Corpus Analysis Platform at the
L<Leibniz Institute for the German Language (IDS)|http://ids-mannheim.de/>,
member of the
L<Leibniz-Gemeinschaft|http://www.leibniz-gemeinschaft.de/>.

This program is free software published under the
L<BSD-2 License|https://raw.githubusercontent.com/KorAP/KorAP-XML-TEI/master/LICENSE>.

=cut