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Hao Zhu6a076462017-03-01 12:59:01 -05001---
2title: "Create Awesome LaTeX Table with knitr::kable and kableExtra"
3author: "Hao Zhu"
4date: "`r Sys.Date()`"
5output:
6 pdf_document:
7 toc: true
8 toc_depth: 2
Hao Zhu014d6212017-08-07 04:20:23 +08009header-includes:
10 - \usepackage{booktabs}
11 - \usepackage{longtable}
12 - \usepackage{array}
13 - \usepackage{multirow}
Hao Zhu014d6212017-08-07 04:20:23 +080014 - \usepackage{wrapfig}
Hao Zhu245931c2017-09-01 22:43:56 -040015 - \usepackage{float}
Hao Zhu65216052017-09-04 13:01:29 -040016 - \usepackage{colortbl}
17 - \usepackage{pdflscape}
18 - \usepackage{tabu}
19 - \usepackage{threeparttable}
Hao Zhu5e4dd502018-04-05 12:01:58 -040020 - \usepackage{threeparttablex}
Hao Zhuef0c8302018-01-12 13:30:20 -050021 - \usepackage[normalem]{ulem}
Hao Zhu5e4dd502018-04-05 12:01:58 -040022 - \usepackage{makecell}
Hao Zhu014d6212017-08-07 04:20:23 +080023vignette: >
24 %\VignetteIndexEntry{Create Awesome PDF Table with knitr::kable and kableExtra}
25 %\VignetteEngine{knitr::rmarkdown}
26 %\VignetteEncoding{UTF-8}
Hao Zhu6a076462017-03-01 12:59:01 -050027---
28
Hao Zhu6a1cbb52017-10-24 15:54:50 -040029\clearpage
30
Hao Zhue1be9602017-08-17 15:44:31 -040031> Please see the package [documentation site](http://haozhu233.github.io/kableExtra) for how to use this package in HTML and more.
Hao Zhu014d6212017-08-07 04:20:23 +080032
Hao Zhu6a076462017-03-01 12:59:01 -050033# Overview
Hao Zhudda2f722018-05-21 00:38:11 -040034\begin{wrapfigure}{r}{0.2\textwidth}\centering
35 \includegraphics{kableExtra_sm.png}
36\end{wrapfigure}
Hao Zhu6107f372018-05-21 00:23:26 -040037The goal of `kableExtra` is to help you build common complex tables and manipulate table styles. It imports the pipe `%>%` symbol from `magrittr` and verbalizes all the functions, so basically you can add "layers" to a kable output in a way that is similar with `ggplot2` and `plotly`.
Hao Zhu6a076462017-03-01 12:59:01 -050038
Hao Zhue305aa02018-08-23 08:35:50 -040039To learn how to generate complex tables in HTML, please visit [http://haozhu233.github.io/kableExtra/awesome_table_in_html.html](http://haozhu233.github.io/kableExtra/awesome_table_in_html.html).
Hao Zhu0a0e8332017-08-03 13:21:29 -040040
Hao Zhu6a076462017-03-01 12:59:01 -050041# Installation
Hao Zhu6a076462017-03-01 12:59:01 -050042```r
Hao Zhu74eb6ad2017-03-04 09:32:37 -050043install.packages("kableExtra")
44
Hao Zhu6a076462017-03-01 12:59:01 -050045# For dev version
Hao Zhuf9aa4c42017-05-22 15:53:35 -040046# install.packages("devtools")
Hao Zhu6a076462017-03-01 12:59:01 -050047devtools::install_github("haozhu233/kableExtra")
48```
Hao Zhuf9aa4c42017-05-22 15:53:35 -040049
Hao Zhu6a076462017-03-01 12:59:01 -050050# Getting Started
51Here we are using the first few columns and rows from dataset `mtcars`
Hao Zhu7039ecf2019-01-06 17:51:21 -050052```{r, echo = F}
53options(kableExtra.latex.load_packages = F)
54```
55
Hao Zhu6a076462017-03-01 12:59:01 -050056```{r}
57library(knitr)
58library(kableExtra)
59dt <- mtcars[1:5, 1:6]
60```
61
Hao Zhu6107f372018-05-21 00:23:26 -040062When you are using `kable()`, if you don't specify `format`, by default it will generate a markdown table and let pandoc handle the conversion from markdown to HTML/PDF. This is the most favorable approach to render most simple tables as it is format independent. If you switch from HTML to pdf, you basically don't need to change anything in your code. However, markdown doesn't support complex table. For example, if you want to have a double-row header table, markdown just cannot provide you the functionality you need. As a result, when you have such a need, you should **define `format` in `kable()`** as either "html" or "latex". *You can also define a global option at the beginning using `options(knitr.table.format = "latex")` so you don't repeat the step every time.* **In this tutorial, I’ll still put format="latex" in the function in
63case users just want to quickly replicate the results. In practice, you don't need to define those formats.**
64
65**Starting from `kableExtra` 0.9.0**, when you load this package (`library(kableExtra)`), `r text_spec("it will automatically set up the global option 'knitr.table.format' based on your current environment", bold = T, color = "red")`. Unless you are rendering a PDF, `kableExtra` will try to render a HTML table for you. **You no longer need to manually set either the global option or the `format` option in each `kable()` function**. I'm still including the explanation above here in this vignette so you can understand what is going on behind the scene. Note that this is only an global option. You can manually set any format in `kable()` whenever you want. I just hope you can enjoy a peace of mind in most of your time.
66
67You can disable this behavior by setting `options(kableExtra.auto_format = FALSE)` before you load `kableExtra`.
Hao Zhu6a076462017-03-01 12:59:01 -050068
69```{r}
Hao Zhu6107f372018-05-21 00:23:26 -040070# If you are using kableExtra < 0.9.0, you are recommended to set a global option first.
71# options(knitr.table.format = "latex")
Hao Zhu6a076462017-03-01 12:59:01 -050072## If you don't define format here, you'll need put `format = "latex"`
73## in every kable function.
74```
75
Hao Zhuc761ee52017-09-04 13:04:35 -040076## LaTeX packages used in this package
Hao Zhu65216052017-09-04 13:01:29 -040077If you are using a recent version of rmarkdown, you are recommended to load this package entirely via `library(kableExtra)` or `require(kableExtra)` because this package will load all necessary LaTeX packages, such as `booktabs` or `multirow`, for you automatically. Note that, if you are calling functions from `kableExtra` via `kableExtra::kable_styling()` or if you put `library(kableExtra)` in a separate R file that is **sourced** by the rmarkdown document, these packages won't be loaded. Furthermore, you can suppress this auto-loading behavior by setting a global option `kableExtra.latex.load_packages` to be `FALSE` before you load `kableExtra`.
78
Hao Zhub350b9f2017-09-04 13:07:57 -040079```{r, eval = FALSE}
Hao Zhu2e318eb2017-09-04 13:18:42 -040080# Not evaluated. Ilustration purpose
Hao Zhu5ece06e2018-01-19 23:18:02 -050081options(kableExtra.latex.load_packages = FALSE)
Hao Zhu2e318eb2017-09-04 13:18:42 -040082library(kableExtra)
Hao Zhu65216052017-09-04 13:01:29 -040083```
84
Hao Zhuce5ee412017-10-23 01:14:38 -040085If you are using R Sweave, beamer, R package vignette template, tufte or some customized rmarkdown templates, you can put the following meta data into the `yaml` section. If you are familar with LaTeX and you know what you are doing, feel free to remove unnecessary packages from the list.
Hao Zhu65216052017-09-04 13:01:29 -040086
Hao Zhuce5ee412017-10-23 01:14:38 -040087```
Hao Zhu65216052017-09-04 13:01:29 -040088header-includes:
89 - \usepackage{booktabs}
90 - \usepackage{longtable}
91 - \usepackage{array}
92 - \usepackage{multirow}
Hao Zhu65216052017-09-04 13:01:29 -040093 - \usepackage{wrapfig}
94 - \usepackage{float}
95 - \usepackage{colortbl}
96 - \usepackage{pdflscape}
97 - \usepackage{tabu}
98 - \usepackage{threeparttable}
Hao Zhu5e4dd502018-04-05 12:01:58 -040099 - \usepackage{threeparttablex}
Hao Zhuef0c8302018-01-12 13:30:20 -0500100 - \usepackage[normalem]{ulem}
Hao Zhu5e4dd502018-04-05 12:01:58 -0400101 - \usepackage{makecell}
Hao Zhu65216052017-09-04 13:01:29 -0400102```
103
Hao Zhu7039ecf2019-01-06 17:51:21 -0500104Note: `kableExtra` was using `xcolor` for alternative row color before 1.0. However, the recent updates in `fancyvbr` causes a clash in `xcolor` option. Therefore, we removed the `xcolor` dependency in version 1.0 and started to rely on `colortbl` completely. If you experience any issues, please report on github.
105
Hao Zhu6a076462017-03-01 12:59:01 -0500106## Plain LaTeX
107Plain LaTeX table looks relatively ugly in 2017.
108```{r}
Hao Zhu6107f372018-05-21 00:23:26 -0400109# Again, with kableExtra >= 0.9.0, `format = "latex"` is automatically defined
110# when this package gets loaded. Otherwise, you still need to define formats
111kable(dt)
112# Same: kable(dt, "latex")
Hao Zhu6a076462017-03-01 12:59:01 -0500113```
114
Hao Zhu0a0e8332017-08-03 13:21:29 -0400115## LaTeX table with booktabs
Hao Zhu6107f372018-05-21 00:23:26 -0400116Similar to Bootstrap in HTML, in LaTeX, you can also use a trick to make your table look prettier as well. The different part is that, this time you don't need to pipe kable outputs to another function. Instead, you should call `booktabs = T` directly in `kable()`.
117
Hao Zhu6a076462017-03-01 12:59:01 -0500118```{r}
Hao Zhu6107f372018-05-21 00:23:26 -0400119kable(dt, "latex", booktabs = T)
Hao Zhu6a076462017-03-01 12:59:01 -0500120```
121
122# Table Styles
123`kable_styling` in LaTeX uses the same syntax and structure as `kable_styling` in HTML. However, instead of `bootstrap_options`, you should specify `latex_options` instead.
124
Hao Zhu0a0e8332017-08-03 13:21:29 -0400125## LaTeX options
Hao Zhu6a076462017-03-01 12:59:01 -0500126Similar with `bootstap_options`, `latex_options` is also a charter vector with a bunch of options including `striped`, `hold_position` and `scale_down`.
127
128### Striped
129Even though in the LaTeX world, people usually call it `alternative row colors` but here I'm using its bootstrap name for consistency. Note that to make it happen, LaTeX package `xcolor` is required to be loaded. In an environment like rmarkdown::pdf_document (rmarkdown 1.4.0 +), `kable_styling` will load it automatically if `striped` is enabled. However, in other cases, you probably need to import that package by yourself.
130```{r}
Hao Zhu6107f372018-05-21 00:23:26 -0400131kable(dt, "latex", booktabs = T) %>%
Hao Zhu6a076462017-03-01 12:59:01 -0500132 kable_styling(latex_options = "striped")
133```
134
Hao Zhu0a0e8332017-08-03 13:21:29 -0400135### Hold position
Hao Zhuf03decd2017-09-13 10:45:44 -0400136If you provide a table caption in `kable()`, it will put your LaTeX tabular in a `table` environment, unless you are using `longtable`. A `table` environment will automatically find the best place (it thinks) to put your table. However, in many cases, you do want your table to appear in a position you want it to be. In this case, you can use this `hold_position` options here.
Hao Zhu6a076462017-03-01 12:59:01 -0500137```{r}
Hao Zhu6107f372018-05-21 00:23:26 -0400138kable(dt, "latex", caption = "Demo table", booktabs = T) %>%
Hao Zhu6a076462017-03-01 12:59:01 -0500139 kable_styling(latex_options = c("striped", "hold_position"))
140```
141
Hao Zhu6107f372018-05-21 00:23:26 -0400142If you find `hold_position` is not powerful enough to literally PIN your table in the exact position, you may want to use `HOLD_position`, which is a more powerful version of this feature. For those who are familiar with LaTeX, `hold_position` uses `[!h]` and `HOLD_position` uses `[H]` and the `float` package.
Hao Zhuf03decd2017-09-13 10:45:44 -0400143
Hao Zhu6a076462017-03-01 12:59:01 -0500144### Scale down
Hao Zhu6107f372018-05-21 00:23:26 -0400145When you have a wide table that will normally go out of the page, and you want to scale down the table to fit the page, you can use the `scale_down` option here. Note that, if your table is too small, it will also scale up your table. It was named in this way only because scaling up isn't very useful in most cases.
Hao Zhu6a076462017-03-01 12:59:01 -0500146```{r}
Hao Zhu6107f372018-05-21 00:23:26 -0400147kable(cbind(dt, dt, dt), "latex", booktabs = T) %>%
Hao Zhu6a076462017-03-01 12:59:01 -0500148 kable_styling(latex_options = c("striped", "scale_down"))
149```
150```{r}
Hao Zhu6107f372018-05-21 00:23:26 -0400151kable(cbind(dt), "latex", booktabs = T) %>%
Hao Zhu6a076462017-03-01 12:59:01 -0500152 kable_styling(latex_options = c("striped", "scale_down"))
153```
154
Hao Zhu0a0e8332017-08-03 13:21:29 -0400155### Repeat header in longtable
Hao Zhu6107f372018-05-21 00:23:26 -0400156In `kableExtra` 0.3.0 or above, a new option `repeat_header` was introduced into `kable_styling`. It will add header rows to longtables spanning multiple pages. For table captions on following pages, it will append *"continued"* to the caption to differentiate. If you need texts other than *"(continued)"* (for example, other languages), you can specify it using `kable_styling(..., repeat_header_text = "xxx")`. If you want to completely replace the table caption instead of appending, you can specify it in the option `repeat_header_method`.
Hao Zhu6ff9d502017-06-13 17:13:03 -0400157```{r}
158long_dt <- rbind(mtcars, mtcars)
159
Hao Zhu6107f372018-05-21 00:23:26 -0400160kable(long_dt, "latex", longtable = T, booktabs = T, caption = "Longtable") %>%
Hao Zhu6ff9d502017-06-13 17:13:03 -0400161 add_header_above(c(" ", "Group 1" = 5, "Group 2" = 6)) %>%
162 kable_styling(latex_options = c("repeat_header"))
163```
164
Hao Zhu6a076462017-03-01 12:59:01 -0500165
Hao Zhu0a0e8332017-08-03 13:21:29 -0400166## Full width?
Hao Zhuf03decd2017-09-13 10:45:44 -0400167If you have a small table and you want it to spread wide on the page, you can try the `full_width` option. Unlike `scale_down`, it won't change your font size. You can use `column_spec`, which will be explained later, together with `full_width` to achieve the best result.
Hao Zhu6a076462017-03-01 12:59:01 -0500168```{r}
Hao Zhu6107f372018-05-21 00:23:26 -0400169kable(dt, "latex", booktabs = T) %>%
Hao Zhuf03decd2017-09-13 10:45:44 -0400170 kable_styling(full_width = T) %>%
171 column_spec(1, width = "8cm")
Hao Zhu6a076462017-03-01 12:59:01 -0500172```
173
174## Position
175Table Position only matters when the table doesn't have `full_width`. You can choose to align the table to `center` or `left` side of the page. The default value of position is `center`.
176
177Note that even though you can select to `right` align your table but the table will actually be centered. Somehow it is very difficult to right align a table in LaTeX (since it's not very useful in the real world?). If you know how to do it, please send out an issue or PR and let me know.
178```{r}
Hao Zhu6107f372018-05-21 00:23:26 -0400179kable(dt, "latex", booktabs = T) %>%
Hao Zhu6a076462017-03-01 12:59:01 -0500180 kable_styling(position = "center")
181```
182
183Becides these three common options, you can also wrap text around the table using the `float-left` or `float-right` options. Note that, like `striped`, this feature will load another non-default LaTeX package `wrapfig` which requires rmarkdown 1.4.0 +. If you rmarkdown version < 1.4.0, you need to load the package through a customed LaTeX template file.
184```{r}
Hao Zhu6107f372018-05-21 00:23:26 -0400185kable(dt, "latex", booktabs = T) %>%
Hao Zhu6a076462017-03-01 12:59:01 -0500186 kable_styling(position = "float_right")
187```
188Lorem ipsum dolor sit amet, consectetur adipiscing elit. Cras sit amet mauris in ex ultricies elementum vel rutrum dolor. Phasellus tempor convallis dui, in hendrerit mauris placerat scelerisque. Maecenas a accumsan enim, a maximus velit. Pellentesque in risus eget est faucibus convallis nec at nulla. Phasellus nec lacinia justo. Morbi fermentum, orci id varius accumsan, nibh neque porttitor ipsum, consectetur luctus risus arcu ac ex. Aenean a luctus augue. Suspendisse et auctor nisl. Suspendisse cursus ultrices quam non vulputate. Phasellus et pharetra neque, vel feugiat erat. Sed feugiat elit at mauris commodo consequat. Sed congue lectus id mattis hendrerit. Mauris turpis nisl, congue eget velit sed, imperdiet convallis magna. Nam accumsan urna risus, non feugiat odio vehicula eget.
189
190## Font Size
191If one of your tables is huge and you want to use a smaller font size for that specific table, you can use the `font_size` option.
192```{r}
Hao Zhu6107f372018-05-21 00:23:26 -0400193kable(dt, "latex", booktabs = T) %>%
Hao Zhu6a076462017-03-01 12:59:01 -0500194 kable_styling(font_size = 7)
195```
196
Hao Zhu0a0e8332017-08-03 13:21:29 -0400197# Column / Row Specification
198## Column spec
Hao Zhu6107f372018-05-21 00:23:26 -0400199When you have a table with lots of explanatory texts, you may want to specify the column width for different column, since the auto adjust in HTML may not work in its best way while basic LaTeX table is really bad at handling text wrapping. Also, sometimes, you may want to highlight a column (e.g., a "Total" column) by making it bold. In these scenarios, you can use `column_spec()`. You can find an example below.
Hao Zhu0a0e8332017-08-03 13:21:29 -0400200```{r}
201text_tbl <- data.frame(
202 Items = c("Item 1", "Item 2", "Item 3"),
203 Features = c(
204 "Lorem ipsum dolor sit amet, consectetur adipiscing elit. Proin vehicula tempor ex. Morbi malesuada sagittis turpis, at venenatis nisl luctus a. ",
205 "In eu urna at magna luctus rhoncus quis in nisl. Fusce in velit varius, posuere risus et, cursus augue. Duis eleifend aliquam ante, a aliquet ex tincidunt in. ",
206 "Vivamus venenatis egestas eros ut tempus. Vivamus id est nisi. Aliquam molestie erat et sollicitudin venenatis. In ac lacus at velit scelerisque mattis. "
207 )
208)
209
Hao Zhu6107f372018-05-21 00:23:26 -0400210kable(text_tbl, "latex", booktabs = T) %>%
Hao Zhu0a0e8332017-08-03 13:21:29 -0400211 kable_styling(full_width = F) %>%
Hao Zhua44e3752017-09-05 12:56:19 -0400212 column_spec(1, bold = T, color = "red") %>%
Hao Zhu0a0e8332017-08-03 13:21:29 -0400213 column_spec(2, width = "30em")
214```
215
216## Row spec
Hao Zhu6107f372018-05-21 00:23:26 -0400217Similar with `column_spec`, you can define specifications for rows. Currently, you can either bold or italicize an entire row. Note that, similar to other row-related functions in `kableExtra`, for the position of the target row, you don't need to count in header rows or the group labeling rows.
Hao Zhu0a0e8332017-08-03 13:21:29 -0400218
219```{r}
Hao Zhu6107f372018-05-21 00:23:26 -0400220kable(dt, "latex", booktabs = T) %>%
Hao Zhu0a0e8332017-08-03 13:21:29 -0400221 kable_styling("striped", full_width = F) %>%
Hao Zhuf70fba92017-09-07 17:53:40 -0400222 column_spec(7, border_left = T, bold = T) %>%
Hao Zhuef0c8302018-01-12 13:30:20 -0500223 row_spec(1, strikeout = T) %>%
Hao Zhuf03decd2017-09-13 10:45:44 -0400224 row_spec(3:5, bold = T, color = "white", background = "black")
Hao Zhu0a0e8332017-08-03 13:21:29 -0400225```
226
Hao Zhu6f362bb2017-10-23 23:21:38 -0400227## Header Rows
228One special case of `row_spec` is that you can specify the format of the header row via `row_spec(row = 0, ...)`.
229```{r}
Hao Zhu6107f372018-05-21 00:23:26 -0400230kable(dt, "latex", booktabs = T, align = "c") %>%
Hao Zhu6f362bb2017-10-23 23:21:38 -0400231 kable_styling(latex_options = "striped", full_width = F) %>%
232 row_spec(0, angle = 45)
233```
234
235
236
Hao Zhuce5ee412017-10-23 01:14:38 -0400237# Cell/Text Specification
Hao Zhu6107f372018-05-21 00:23:26 -0400238Function `cell_spec` is introduced in version 0.6.0 of `kableExtra`. Unlike `column_spec` and `row_spec`, **this function is designed to be used before the data.frame gets into the `kable` function**. Comparing with figuring out a list of 2 dimensional indexes for targeted cells, this design is way easier to learn and use, and it fits perfectly well with `dplyr`'s `mutate` and `summarize` functions. With this design, there are two things to be noted:
Hao Zhuce5ee412017-10-23 01:14:38 -0400239* Since `cell_spec` generates raw `HTML` or `LaTeX` code, make sure you remember to put `escape = FALSE` in `kable`. At the same time, you have to escape special symbols including `%` manually by yourself
240* `cell_spec` needs a way to know whether you want `html` or `latex`. You can specify it locally in function or globally via the `options(knitr.table.format = "latex")` method as suggested at the beginning. If you don't provide anything, this function will output as HTML by default.
241
242Currently, `cell_spec` supports features including bold, italic, monospace, text color, background color, align, font size & rotation angle. More features may be added in the future. Please see function documentations as reference.
243
244## Conditional logic
245It is very easy to use `cell_spec` with conditional logic. Here is an example.
Hao Zhu6f362bb2017-10-23 23:21:38 -0400246```{r, message=FALSE, warning=FALSE}
247library(dplyr)
Hao Zhuce5ee412017-10-23 01:14:38 -0400248mtcars[1:10, 1:2] %>%
249 mutate(
Hao Zhuce5ee412017-10-23 01:14:38 -0400250 car = row.names(.),
Hao Zhu6f362bb2017-10-23 23:21:38 -0400251 # You don't need format = "latex" if you have ever defined options(knitr.table.format)
252 mpg = cell_spec(mpg, "latex", color = ifelse(mpg > 20, "red", "blue")),
253 cyl = cell_spec(cyl, "latex", color = "white", align = "c", angle = 45,
Hao Zhuce5ee412017-10-23 01:14:38 -0400254 background = factor(cyl, c(4, 6, 8),
255 c("#666666", "#999999", "#BBBBBB")))
256 ) %>%
257 select(car, mpg, cyl) %>%
258 kable("latex", escape = F, booktabs = T, linesep = "")
259```
260
261## Visualize data with Viridis Color
Hao Zhu07305132017-10-24 15:41:49 -0400262This package also comes with a few helper functions, including `spec_color`, `spec_font_size` & `spec_angle`. These functions can rescale continuous variables to certain scales. For example, function `spec_color` would map a continuous variable to any [viridis color palettes](https://CRAN.R-project.org/package=viridisLite). It offers a very visually impactful representation in a tabular format.
Hao Zhuce5ee412017-10-23 01:14:38 -0400263
264```{r}
265iris[1:10, ] %>%
266 mutate_if(is.numeric, function(x) {
Hao Zhu6f362bb2017-10-23 23:21:38 -0400267 cell_spec(x, "latex", bold = T, color = spec_color(x, end = 0.9),
Hao Zhuce5ee412017-10-23 01:14:38 -0400268 font_size = spec_font_size(x))
269 }) %>%
270 mutate(Species = cell_spec(
Hao Zhu6f362bb2017-10-23 23:21:38 -0400271 Species, "latex", color = "white", bold = T,
Hao Zhuce5ee412017-10-23 01:14:38 -0400272 background = spec_color(1:10, end = 0.9, option = "A", direction = -1)
273 )) %>%
274 kable("latex", escape = F, booktabs = T, linesep = "", align = "c")
275```
276
277In the example above, I'm using the `mutate` functions from `dplyr`. You don't have to use it. Base R solutions like `iris$Species <- cell_spec(iris$Species, color = "red")` also works.
278
279## Text Specification
280If you check the results of `cell_spec`, you will find that this function does nothing more than wrapping the text with appropriate HTML/LaTeX formatting syntax. The result of this function is just a vector of character strings. As a result, when you are writing a `rmarkdown` document or write some text in shiny apps, if you need extra markups other than **bold** or *italic*, you may use this function to `r text_spec("color", color = "red")`, `r text_spec("change font size ", font_size = 16)` or `r text_spec("rotate", angle = 30)` your text.
281
Hao Zhu6f362bb2017-10-23 23:21:38 -0400282An aliased function `text_spec` is also provided for a more literal writing experience. The only difference is that in LaTeX, unless you specify `latex_background_in_cell = FALSE` (default is `TRUE`) in `cell_spec`, it will define cell background color as `\cellcolor{}`, which doesn't work outside of a table, while for `text_spec`, the default value for `latex_background_in_cell` is `FALSE`.
Hao Zhuce5ee412017-10-23 01:14:38 -0400283
284```{r}
285sometext <- strsplit(paste0(
Hao Zhu6290fdd2017-10-24 00:10:32 -0400286 "You can even try to make some crazy things like this paragraph. ",
Hao Zhu6a1cbb52017-10-24 15:54:50 -0400287 "It may seem like a useless feature right now but it's so cool ",
288 "and nobody can resist. ;)"
Hao Zhuce5ee412017-10-23 01:14:38 -0400289), " ")[[1]]
290text_formatted <- paste(
Hao Zhu6f362bb2017-10-23 23:21:38 -0400291 text_spec(sometext, "latex", color = spec_color(1:length(sometext), end = 0.9),
292 font_size = spec_font_size(1:length(sometext), begin = 5, end = 20)),
Hao Zhuce5ee412017-10-23 01:14:38 -0400293 collapse = " ")
294
295# To display the text, type `r text_formatted` outside of the chunk
296```
297`r text_formatted`
298
Hao Zhu0a0e8332017-08-03 13:21:29 -0400299# Grouped Columns / Rows
300## Add header rows to group columns
Hao Zhu6a076462017-03-01 12:59:01 -0500301Tables with multi-row headers can be very useful to demonstrate grouped data. To do that, you can pipe your kable object into `add_header_above()`. The header variable is supposed to be a named character with the names as new column names and values as column span. For your convenience, if column span equals to 1, you can ignore the `=1` part so the function below can be written as `add_header_above(c(" ", "Group 1" = 2, "Group 2" = 2, "Group 3" = 2)).
302```{r}
Hao Zhu6107f372018-05-21 00:23:26 -0400303kable(dt, "latex", booktabs = T) %>%
Hao Zhu6a076462017-03-01 12:59:01 -0500304 kable_styling() %>%
305 add_header_above(c(" " = 1, "Group 1" = 2, "Group 2" = 2, "Group 3" = 2))
306```
307
Hao Zhuce5ee412017-10-23 01:14:38 -0400308In fact, if you want to add another row of header on top, please feel free to do so. Also, since kableExtra 0.3.0, you can specify `bold` & `italic` as you do in `row_spec()`.
Hao Zhu6a076462017-03-01 12:59:01 -0500309```{r}
Hao Zhu6107f372018-05-21 00:23:26 -0400310kable(dt, "latex", booktabs = T) %>%
Hao Zhu00ba87c2017-08-01 12:42:58 -0400311 kable_styling(latex_options = "striped") %>%
Hao Zhu6a076462017-03-01 12:59:01 -0500312 add_header_above(c(" ", "Group 1" = 2, "Group 2" = 2, "Group 3" = 2)) %>%
313 add_header_above(c(" ", "Group 4" = 4, "Group 5" = 2)) %>%
Hao Zhu916c3662017-06-21 15:55:05 -0400314 add_header_above(c(" ", "Group 6" = 6), bold = T, italic = T)
Hao Zhu6a076462017-03-01 12:59:01 -0500315```
316
Hao Zhu0a0e8332017-08-03 13:21:29 -0400317## Group rows via labeling
318Sometimes we want a few rows of the table being grouped together. They might be items under the same topic (e.g., animals in one species) or just different data groups for a categorical variable (e.g., age < 40, age > 40). With the new function `group_rows()` in `kableExtra`, this kind of task can be completed in one line. Please see the example below. Note that when you count for the start/end rows of the group, you don't need to count for the header rows nor other group label rows. You only need to think about the row numbers in the "original R dataframe".
319```{r}
Hao Zhu6107f372018-05-21 00:23:26 -0400320kable(mtcars[1:10, 1:6], "latex", caption = "Group Rows", booktabs = T) %>%
Hao Zhu0a0e8332017-08-03 13:21:29 -0400321 kable_styling() %>%
322 group_rows("Group 1", 4, 7) %>%
323 group_rows("Group 2", 8, 10)
324```
325
326In case some users need it, you can define your own gapping spaces between the group labeling row and previous rows. The default value is `0.5em`.
327```{r}
Hao Zhu6107f372018-05-21 00:23:26 -0400328kable(dt, "latex", booktabs = T) %>%
Hao Zhu0a0e8332017-08-03 13:21:29 -0400329 group_rows("Group 1", 4, 5, latex_gap_space = "2em")
330```
331
Hao Zhuf03decd2017-09-13 10:45:44 -0400332If you prefer to build multiple groups in one step, you can use the short-hand `index` option. Basically, you can use it in the same way as you use `add_header_above`. However, since `group_row` only support one layer of grouping, you can't add multiple layers of grouping header as you can do in `add_header_above`.
333```{r, eval=FALSE}
Hao Zhu6107f372018-05-21 00:23:26 -0400334kable(mtcars[1:10, 1:6], "latex", caption = "Group Rows", booktabs = T) %>%
Hao Zhuf03decd2017-09-13 10:45:44 -0400335 kable_styling() %>%
336 group_rows(index=c(" " = 3, "Group 1" = 4, "Group 2" = 3))
337# Not evaluated. The code above should have the same result as the first example in this section.
338```
339
Hao Zhu23bde3a2018-03-28 16:00:55 -0400340Note that `kable` has a relatively special feature to handle `align` and it may bring troubles to you if you are not using it correctly. In the documentation of the `align` argument of `kable`, it says:
341
342> If `length(align) == 1L`, the string will be expanded to a vector of individual letters, e.g. `'clc'` becomes `c('c', 'l', 'c')`, **unless the output format is LaTeX**.
343
344For example,
345```{r, eval=F}
346kable(mtcars[1:2, 1:2], "latex", align = c("cl"))
347# \begin{tabular}{l|cl|cl} # Note the column alignment here
348# \hline
349# & mpg & cyl\\
350# ...
351```
352
Hao Zhu6107f372018-05-21 00:23:26 -0400353LaTeX, somehow shows surprisingly high tolerance on that, which is quite unusual. As a result, it won't throw an error if you are just using `kable` to make some simple tables. However, when you use `kableExtra` to make some advanced modification, it will start to throw some bugs. As a result, please try to form a habit of using a vector in the `align` argument for `kable` (tip: you can use `rep` function to replicate elements. For example, `c("c", rep("l", 10))`).
Hao Zhu23bde3a2018-03-28 16:00:55 -0400354
Hao Zhu0a0e8332017-08-03 13:21:29 -0400355## Row indentation
Hao Zhu6107f372018-05-21 00:23:26 -0400356Unlike `group_rows()`, which will insert a labeling row, sometimes we want to list a few sub groups under a total one. In that case, `add_indent()` is probably more appropriate.
Hao Zhu0a0e8332017-08-03 13:21:29 -0400357For advanced users, you can even define your own css for the group labeling.
358```{r}
Hao Zhu6107f372018-05-21 00:23:26 -0400359kable(dt, "latex", booktabs = T) %>%
Hao Zhu0a0e8332017-08-03 13:21:29 -0400360 add_indent(c(1, 3, 5))
361```
362
363## Group rows via multi-row cell
Hao Zhu6107f372018-05-21 00:23:26 -0400364Function `group_rows` is great for showing simple structural information on rows but sometimes people may need to show structural information with multiple layers. When it happens, you may consider using `collapse_rows` instead, which will put repeating cells in columns into multi-row cells.
Hao Zhu12b0ade2018-01-13 16:19:58 -0500365
Hao Zhuec169362018-05-21 01:05:29 -0400366In LaTeX, `collapse_rows` adds some extra hlines to help differentiate groups. You can customize this behavior using the `latex_hline` argument. You can choose from `full` (default), `major` and `none`. Vertical alignment of cells is controlled by the `valign` option. You can choose from "top", "middle"(default) and "bottom". Be cautious that the vertical alignment option was only introduced in multirow in 2016. If you are using a legacy LaTeX distribution, you will run into trouble if you set `valign` to be either "top" or "bottom".
Hao Zhu0a0e8332017-08-03 13:21:29 -0400367
368```{r}
369collapse_rows_dt <- data.frame(C1 = c(rep("a", 10), rep("b", 5)),
370 C2 = c(rep("c", 7), rep("d", 3), rep("c", 2), rep("d", 3)),
371 C3 = 1:15,
372 C4 = sample(c(0,1), 15, replace = TRUE))
Hao Zhu6107f372018-05-21 00:23:26 -0400373kable(collapse_rows_dt, "latex", booktabs = T, align = "c") %>%
Hao Zhu0a0e8332017-08-03 13:21:29 -0400374 column_spec(1, bold=T) %>%
Hao Zhuec169362018-05-21 01:05:29 -0400375 collapse_rows(columns = 1:2, latex_hline = "major", valign = "middle")
Hao Zhu0a0e8332017-08-03 13:21:29 -0400376```
377
Hao Zhu6107f372018-05-21 00:23:26 -0400378Right now, you can't automatically make striped rows based on collapsed rows but you can do it manually via the `extra_latex_after` option in `row_spec`. This feature is not officially supported. I'm only document it here if you want to give it a try.
Hao Zhu0a0e8332017-08-03 13:21:29 -0400379```{r}
Hao Zhu6107f372018-05-21 00:23:26 -0400380kable(collapse_rows_dt[-1], "latex", align = "c", booktabs = T) %>%
Hao Zhu0a0e8332017-08-03 13:21:29 -0400381 column_spec(1, bold = T, width = "5em") %>%
Hao Zhu6107f372018-05-21 00:23:26 -0400382 row_spec(c(1:7, 11:12) - 1, extra_latex_after = "\\rowcolor{gray!6}") %>%
383 collapse_rows(1, latex_hline = "none")
Hao Zhu0a0e8332017-08-03 13:21:29 -0400384```
385
Hao Zhu778b70a2018-04-02 12:21:17 -0400386When there are too many layers, sometimes the table can become too wide. You can choose to stack the first few layers by setting `row_group_label_position` to `stack`.
Hao Zhu23bde3a2018-03-28 16:00:55 -0400387
388
Hao Zhu778b70a2018-04-02 12:21:17 -0400389```{r}
390collapse_rows_dt <- expand.grid(
391 Country = sprintf('Country with a long name %s', c('A', 'B')),
392 State = sprintf('State %s', c('a', 'b')),
393 City = sprintf('City %s', c('1', '2')),
394 District = sprintf('District %s', c('1', '2'))
395) %>% arrange(Country, State, City) %>%
396 mutate_all(as.character) %>%
397 mutate(C1 = rnorm(n()),
398 C2 = rnorm(n()))
399
Hao Zhu6107f372018-05-21 00:23:26 -0400400kable(collapse_rows_dt, "latex",
Hao Zhu778b70a2018-04-02 12:21:17 -0400401 booktabs = T, align = "c", linesep = '') %>%
402 collapse_rows(1:3, row_group_label_position = 'stack')
403```
404
405To better distinguish different layers, you can format the each layer using `row_group_label_fonts`. You can also customize the hlines to better differentiate groups.
406
407```{r}
408row_group_label_fonts <- list(
409 list(bold = T, italic = T),
410 list(bold = F, italic = F)
411 )
Hao Zhu6107f372018-05-21 00:23:26 -0400412kable(collapse_rows_dt, "latex",
Hao Zhu778b70a2018-04-02 12:21:17 -0400413 booktabs = T, align = "c", linesep = '') %>%
414 column_spec(1, bold=T) %>%
415 collapse_rows(1:3, latex_hline = 'custom', custom_latex_hline = 1:3,
416 row_group_label_position = 'stack',
417 row_group_label_fonts = row_group_label_fonts)
418```
419
Hao Zhu0a0e8332017-08-03 13:21:29 -0400420# Table Footnote
Hao Zhu6a076462017-03-01 12:59:01 -0500421
Hao Zhu4f8eaa22018-01-11 16:14:25 -0500422> Now it's recommended to use the new `footnote` function instead of `add_footnote` to make table footnotes.
423
424Documentations for `add_footnote` can be found [here](http://haozhu233.github.io/kableExtra/legacy_features#add_footnote).
425
Hao Zhu6107f372018-05-21 00:23:26 -0400426There are four notation systems in `footnote`, namely `general`, `number`, `alphabet` and `symbol`. The last three types of footnotes will be labeled with corresponding marks while `general` won't be labeled. You can pick any one of these systems or choose to display them all for fulfilling the APA table footnotes requirements.
Hao Zhu6a076462017-03-01 12:59:01 -0500427```{r}
Hao Zhu4f8eaa22018-01-11 16:14:25 -0500428kable(dt, "latex", align = "c") %>%
429 kable_styling(full_width = F) %>%
430 footnote(general = "Here is a general comments of the table. ",
431 number = c("Footnote 1; ", "Footnote 2; "),
432 alphabet = c("Footnote A; ", "Footnote B; "),
433 symbol = c("Footnote Symbol 1; ", "Footnote Symbol 2")
434 )
Hao Zhu6a076462017-03-01 12:59:01 -0500435```
436
Hao Zhu6107f372018-05-21 00:23:26 -0400437You can also specify title for each category by using the `***_title` arguments. Default value for `general_title` is "Note: " and "" for the rest three. You can also change the order using `footnote_order`. You can even display footnote as chunk texts (default is as a list) using `footnote_as_chunk`. The font format of the titles are controlled by `title_format` with options including "italic" (default), "bold" and "underline".
Hao Zhu4f8eaa22018-01-11 16:14:25 -0500438
Hao Zhu6a076462017-03-01 12:59:01 -0500439```{r}
Hao Zhu4f8eaa22018-01-11 16:14:25 -0500440kable(dt, "latex", align = "c", booktabs = T) %>%
441 footnote(general = "Here is a general comments of the table. ",
442 number = c("Footnote 1; ", "Footnote 2; "),
443 alphabet = c("Footnote A; ", "Footnote B; "),
444 symbol = c("Footnote Symbol 1; ", "Footnote Symbol 2"),
445 general_title = "General: ", number_title = "Type I: ",
446 alphabet_title = "Type II: ", symbol_title = "Type III: ",
Hao Zhu6107f372018-05-21 00:23:26 -0400447 footnote_as_chunk = T, title_format = c("italic", "underline")
Hao Zhu4f8eaa22018-01-11 16:14:25 -0500448 )
Hao Zhu6a076462017-03-01 12:59:01 -0500449```
450
Hao Zhu6107f372018-05-21 00:23:26 -0400451If you need to add footnote marks in a table, you need to do it manually (no fancy) using `footnote_marker_***()`. Remember that similar with `cell_spec`, you need to tell this function whether you want it to do it in `HTML` (default) or `LaTeX`. You can set it for all using the `knitr.table.format` global option. Also, if you have ever used `footnote_marker_***()`, you need to put `escape = F` in your `kable` function to avoid escaping of special characters. Note that if you want to use these `footnote_marker` functions in `kableExtra` functions like `group_rows` (for the row label) or `add_header_above`, you need to set `double_escape = T` and `escape = F` in those functions. I'm trying to find other ways around. Please let me know if you have a good idea and are willing to contribute.
Hao Zhu6a076462017-03-01 12:59:01 -0500452
Hao Zhu6a076462017-03-01 12:59:01 -0500453```{r}
Hao Zhu4f8eaa22018-01-11 16:14:25 -0500454dt_footnote <- dt
455names(dt_footnote)[2] <- paste0(names(dt_footnote)[2],
456 # That "latex" can be eliminated if defined in global
457 footnote_marker_symbol(1, "latex"))
458row.names(dt_footnote)[4] <- paste0(row.names(dt_footnote)[4],
459 footnote_marker_alphabet(1))
460kable(dt_footnote, "latex", align = "c", booktabs = T,
461 # Remember this escape = F
462 escape = F) %>%
463 footnote(alphabet = "Footnote A; ",
464 symbol = "Footnote Symbol 1; ",
465 alphabet_title = "Type II: ", symbol_title = "Type III: ",
466 footnote_as_chunk = T)
Hao Zhu6a076462017-03-01 12:59:01 -0500467```
Hao Zhuf9aa4c42017-05-22 15:53:35 -0400468
Hao Zhu23bde3a2018-03-28 16:00:55 -0400469If your table footnote is very long, please consider to put your table in a `ThreePartTable` frame. Note that, in kableExtra version <= 0.7.0, we were using `threeparttable` but since kableExtra 0.8.0, we start to use `ThreePartTable` from `threeparttablex` instead. `ThreePartTable` supports both the `longtable` and `tabu` environments.
470
471```{r}
472kable(dt, "latex", align = "c", booktabs = T, caption = "s") %>%
473 footnote(general = "Here is a very very very very very very very very very very very very very very very very very very very very long footnote",
474 threeparttable = T)
475```
476
Hao Zhu0a0e8332017-08-03 13:21:29 -0400477# LaTeX Only Features
Hao Zhu5e4dd502018-04-05 12:01:58 -0400478## Linebreak processor
Hao Zhu6107f372018-05-21 00:23:26 -0400479Unlike in HTML, where you can use `<br>` at any time, in LaTeX, it's actually quite difficult to make a linebreak in a table. Therefore I created the `linebreak` function to facilitate this process. Please see the [Best Practice for Newline in LaTeX Table](http://haozhu233.github.io/kableExtra/best_practice_for_newline_in_latex_table.pdf) for details.
Hao Zhu5e4dd502018-04-05 12:01:58 -0400480
481```{r}
482dt_lb <- data.frame(
483 Item = c("Hello\nWorld", "This\nis a cat"),
484 Value = c(10, 100)
485)
486
487dt_lb %>%
488 mutate_all(linebreak) %>%
489 kable("latex", booktabs = T, escape = F,
490 col.names = linebreak(c("Item\n(Name)", "Value\n(Number)"), align = "c"))
491```
492
493At the same time, since `kableExtra 0.8.0`, all `kableExtra` functions that have some contents input (such as `footnote` or `group_rows`) will automatically convert `\n` to linebreaks for you in both LaTeX and HTML.
494
495
Hao Zhu0a0e8332017-08-03 13:21:29 -0400496## Table on a Landscape Page
Hao Zhu4278c632017-05-24 01:02:50 -0400497Sometimes when we have a wide table, we want it to sit on a designated landscape page. The new function `landscape()` can help you on that. Unlike other functions, this little function only serves LaTeX and doesn't have a HTML side.
498```{r}
Hao Zhu6107f372018-05-21 00:23:26 -0400499kable(dt, "latex", caption = "Demo Table (Landscape)[note]", booktabs = T) %>%
Hao Zhu4278c632017-05-24 01:02:50 -0400500 kable_styling(latex_options = c("hold_position")) %>%
501 add_header_above(c(" ", "Group 1[note]" = 3, "Group 2[note]" = 3)) %>%
502 add_footnote(c("This table is from mtcars",
503 "Group 1 contains mpg, cyl and disp",
504 "Group 2 contains hp, drat and wt"),
505 notation = "symbol") %>%
506 group_rows("Group 1", 4, 5) %>%
507 landscape()
508```
Hao Zhu4840bc92017-09-15 15:55:05 -0400509
510## Use LaTeX table in HTML or Word
Hao Zhu6107f372018-05-21 00:23:26 -0400511If you want to include a LaTeX rendered table in your HTML or Word document, or if you just want to save table as an image, you may consider using `kable_as_image()`. Note that this feature requires you to have [magick](https://github.com/ropensci/magick) installed (`install.packages("magick")`). Also, if you are planning to use it on Windows, you need to install [Ghostscript](https://www.ghostscript.com/). This feature may not work if you are using tinytex. If you are using tinytex, please consider using other alternatives to this function.
Hao Zhu4840bc92017-09-15 15:55:05 -0400512
513```{r, eval = F}
514# Not evaluated.
515
516# The code below will automatically include the image in the rmarkdown document
517kable(dt, "latex", booktabs = T) %>%
518 column_spec(1, bold = T) %>%
519 kable_as_image()
520
521# If you want to save the image locally, just provide a name
522kable(dt, "latex", booktabs = T) %>%
523 column_spec(1, bold = T) %>%
524 kable_as_image("my_latex_table")
525```
Hao Zhu6107f372018-05-21 00:23:26 -0400526
527# From other packages
528Since the structure of `kable` is relatively simple, it shouldn't be too difficult to convert HTML or LaTeX tables generated by other packages to a `kable` object and then use `kableExtra` to modify the outputs. If you are a package author, feel free to reach out to me and we can collaborate.
529
530## `tables`
Hao Zhuec169362018-05-21 01:05:29 -0400531The latest version of [`tables`](https://CRAN.R-project.org/package=tables) comes with a `toKable()` function, which is compatiable with functions in `kableExtra` (>=0.9.0).